Table 3.
An example of p53MH output for known p53-inducible genes
| Gene | Length | Site | Score | Sequence |
|---|---|---|---|---|
| Snk | 26283 | 7968 | 100 | AAACATGCCT.GGACTTGCCC |
| p48-ddb2 | 44746 | 10478 | 100 | GAACAAGCCC T GGGCATGTTT |
| gadd45 | 23161 | 16636 | 100 | AGGCATGTTT G GAGCTAGCTT |
| serpinb5-maspin | 48573 | 7263 | 100 | AGGCATGTTC TCCAG AAACTAGTTT |
| pten-10 | 123338 | 9522 | 100 | GAGCAAGCCC CAGGCAGCTACACT GGGCATGCTC |
| pigpc1-perp | 35853 | 13319 | 95.95 | AGGCAAGCTC.CAGCTTGTTC |
| p21-cdkn1a | 28622 | 15111 | 95.83 | AGACTTGCCT TTGTTGACAT TAGCTTGCCC |
| apaf1 | 110193 | 9397 | 95.69 | AGACATGTCT GGAGACCCTAGGA CGACAAGCCC |
| p53aip1 | 27599 | 19189 | 94.86 | GAGCAAGCTG TAGATCCA AGGCTTGCTT |
| Cycling-G | 26555 | 10309 | 93.62 | GCACAAGCCC.AGGCTAGTCC |
| pig1 | 40531 | 13335 | 93.6 | GCACAAGCCT TTTAAGTCAT GAGCTAGTCC |
| p53r2 | 54618 | 18129 | 93.16 | AACCTTGTTC ATACA AAACAAGTCT |
| sfn (14-3-3-σ) | 21312 | 11242 | 93.12 | AAGCATGTCT GCTGGGTGT GACCATGTTT |
| p53dinp1 | 35023 | 14871 | 92.79 | GAGCTTGTGT TTCATGGCTGAC AGACAAGTTT |
| p53r2 | 54618 | 16981 | 92.14 | TGGCATGTTT TACATACCTACAGT TAGCAAGTTC |
| fas-tnfrsf6 | 45151 | 10653 | 90.92 | GGACAAGCCC.TGACAAGCCA |
| igfbp3 | 29032 | 13172 | 90.9 | AAACAAGCCA C CAACATGCTT |
| siah1 | 47108 | 18036 | 90.89 | TGGCTAGCTA TAGTC GAGCATGTTC |
| serpine1-pai | 31893 | 9774 | 90.36 | ACACATGCCT.CAGCAAGTCC |
| mdm2 | 52293 | 10733 | 79.68 | GGTCAAGTTC.AGACACGTTC |
The first column shows the gene symbol. Length = the total length of the gene; site = first base position of the putative binding site identified by the p53MH algorithm (most of these correspond to the known binding sites), score, and sequence of the identified sites. Translation start site is at position 10,001.