AI	Artificial intelligence
AMD	Age-related macular degeneration
AUCs	Areas Under the Curve
BaySeq	Bayesian Sequencing
CIBERSORT	Cell type Identification By Estimating Relative Subsets Of RNA Transcripts
DAVID	Database for Annotation, Visualization, and Integrated Discovery
DEGs	Differentially expressed genes
DESeq2	Differential Expression analysis based on the Negative Binomial distribution (version 2)
DL	Deep learning
DME	Diabetic macular edema
DNN	Deep neural networks
DR	Diabetic retinopathy
DS-NMF	Deep Subspace Nonnegative Matrix Factorization
ECM	Extracellular matrix
edgeR	Empirical Analysis of Digital Gene Expression Data in R
GO	Gene Ontology
GSEA	Gene Set Enrichment Analysis
GSVA	Gene Set Variation Analysis
GWAS	Genome-Wide Association Study Analysis
iPSC	Induced pluripotent stem cells
KCS	Keratoconjunctivitis sicca
LASSO	Least absolute shrinkage and selection operator
LIGER	Linked Inference of Genomic Experimental Relationships
LIME	Local Interpretable Model–Agnostic Explanations
limma	Linear Models for Microarray Data
MAGIC	Markov Affinity-based Graph Imputation of Cells
MCODE	Molecular Complex Detection
ML	Machine learning
NMF	Negative matrix factorization
NPDR	Non-proliferative diabetic retinopathy
OCT	Optical coherence tomography
PCA	Principal component analysis
PDMS	Polydimethylsiloxane
PDR	Proliferative diabetic retinopathy
POAG	Primary open-angle glaucoma
PVR	Proliferative vitreoretinopathy
QBAM	Quantitative brightfield absorbance microscopy
RF	Random forest
RGCs	Retinal ganglion cells
RNA-seq	RNA sequencing
RPE	Retinal pigment epithelium
SCCAF	Single-Cell Clustering Assessment Framework
ScGPS	Single-Cell Global fate Potential of Subpopulations
ScRNA-seq	Single-cell RNA sequencing
scVI	Single-cell variational inference
SHAP	SHapley Additive exPlanations
SVM	Support vector machine
TED	Thyroid eye disease
TEMPO	Tracing Expression of Multiple Protein Origins
TNF	Tumor Necrosis Factor
t-SNE	t-distributed Stochastic Neighbor Embedding
UMAP	Uniform Manifold Approximation and Projection
VAE	Variational autoencoders
VEGF	Vascular endothelial growth factor
v-SVR	Support vector regression (SVR)
WGCNA	Weighted gene co-expression network analysis
XGBoost	eXtreme Gradient Boosting