3′UTRs	3′untranslated regions
5′UTRs	5′untranslated regions
A	adenosine
AS	alternative splicing
A3SS	alternative 3′ splice site
A5SS	alternative 5′ splice site
ATCC	American Type Culture Collection
BAM	Binary Alignment Map
BPs	biological processes
CDSs	coding sequences
CTR	control
DAG	directed acyclic graph
DASEs	differential alternative splicing events
DEGs	differentially expressed genes
DDR	DNA damage response
FDR	false discovery rate
FBS	Fetal Bovine Serum
GFF3	Generic Feature Format
GO	Gene Ontology
GTF	Gene Transfer Format
IGV	Integrative Genomics Viewer
mfe	minimum free energy
miRNAs	microRNAs
MXE	mutually exclusive exon
ORA	over-representation analysis
PPI	protein–protein interaction
PSI	Percent Spliced In
RA	retinoic acid
RBP	RNA-binding protein
RI	retained intron
rMATS	replicate Multivariate Analysis of Transcript Splicing
SAM	Sequence Alignment Map
SE	skipped exon
SFN	sulforaphane
SFN5	5 µM SFN
snRNPs	small nuclear ribonucleoproteins
SREs	splicing regulatory elements
STAR	Spliced Transcripts Alignment to a Reference