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. 2025 Sep 7;26(17):8717. doi: 10.3390/ijms26178717
AIRs Ambiguous interaction restraints
AKT1 AKT serine/threonine kinase 1
APP Amyloid precursor protein
BC Betweenness centrality
BP Biological process
CASP3 Caspase-3
CC Closeness centrality
CDS Coding sequence
CXCR4 C-X-C chemokine receptor type 4
DC Degree centrality
DRD2 D2 dopamine receptor
EC Eigenvector centrality
EGFR Epidermal growth factor receptor
FDA Food and Drug Administration
FDR False discovery rate
GABA γ-aminobutyric acid
H1R Histamine receptor H1
HADDOCK High ambiguity driven protein-protein docking
HBA Hydrogen bond acceptor
HBD Hydrogen bond donor
ICAM1 Intercellular adhesion molecule 1
IGF1 Insulin-like growth factor 1
IL2 Interleukin-2
iPSC Induced pluripotent stem cell
LBD Ligand-binding domain
MD Molecular dynamics
MF Molecular function
MM/PBSA Molecular mechanics/Poisson-Boltzmann surface area
MMP9 Matrix metalloproteinase-9
NPT Number of particles, pressure, and temperature
NVT Number of particles, volume, and temperature
OMIM Online Mendelian inheritance in man
PDB Protein data bank
PI3K Phosphatidylinositol 3-kinase
PK–PD Pharmacokinetic–pharmacodynamic
PPI Protein–protein interaction
PRODIGY Protein binding energy prediction
RMSD Root mean square deviation
RMSF Root mean square fluctuation
RoG Radius of gyration
SASA Solvent-accessible surface area
SEA Similarity ensemble approach
SMD Steered molecular dynamics
SMILES Simplified molecular input line entry system
SRC Proto-oncogene tyrosine-protein kinase Src
STITCH Search tool for interacting chemicals
STP SwissTargetPrediction
TC Tanimoto coefficient
TNF Tumor necrosis factor