| AIRs | Ambiguous interaction restraints |
| AKT1 | AKT serine/threonine kinase 1 |
| APP | Amyloid precursor protein |
| BC | Betweenness centrality |
| BP | Biological process |
| CASP3 | Caspase-3 |
| CC | Closeness centrality |
| CDS | Coding sequence |
| CXCR4 | C-X-C chemokine receptor type 4 |
| DC | Degree centrality |
| DRD2 | D2 dopamine receptor |
| EC | Eigenvector centrality |
| EGFR | Epidermal growth factor receptor |
| FDA | Food and Drug Administration |
| FDR | False discovery rate |
| GABA | γ-aminobutyric acid |
| H1R | Histamine receptor H1 |
| HADDOCK | High ambiguity driven protein-protein docking |
| HBA | Hydrogen bond acceptor |
| HBD | Hydrogen bond donor |
| ICAM1 | Intercellular adhesion molecule 1 |
| IGF1 | Insulin-like growth factor 1 |
| IL2 | Interleukin-2 |
| iPSC | Induced pluripotent stem cell |
| LBD | Ligand-binding domain |
| MD | Molecular dynamics |
| MF | Molecular function |
| MM/PBSA | Molecular mechanics/Poisson-Boltzmann surface area |
| MMP9 | Matrix metalloproteinase-9 |
| NPT | Number of particles, pressure, and temperature |
| NVT | Number of particles, volume, and temperature |
| OMIM | Online Mendelian inheritance in man |
| PDB | Protein data bank |
| PI3K | Phosphatidylinositol 3-kinase |
| PK–PD | Pharmacokinetic–pharmacodynamic |
| PPI | Protein–protein interaction |
| PRODIGY | Protein binding energy prediction |
| RMSD | Root mean square deviation |
| RMSF | Root mean square fluctuation |
| RoG | Radius of gyration |
| SASA | Solvent-accessible surface area |
| SEA | Similarity ensemble approach |
| SMD | Steered molecular dynamics |
| SMILES | Simplified molecular input line entry system |
| SRC | Proto-oncogene tyrosine-protein kinase Src |
| STITCH | Search tool for interacting chemicals |
| STP | SwissTargetPrediction |
| TC | Tanimoto coefficient |
| TNF | Tumor necrosis factor |