Table 3.
The performance of the BLAST method in terms of coverage of RA-inducing and non-inducing peptides at different e-values.
| BLAST + CeTD (validation dataset) | |||||
|---|---|---|---|---|---|
| E-value | Number of hits | RA-inducers | RA non-inducers | Correct pos | Correct neg |
| 1.00E+10 | 92 | 46 | 46 | 10 | 23 |
| 1.00E+03 | 92 | 46 | 46 | 10 | 23 |
| 1.00E+02 | 87 | 44 | 43 | 9 | 20 |
| 1.00E+01 | 66 | 32 | 34 | 6 | 13 |
| 1.00E+00 | 53 | 28 | 25 | 6 | 12 |
| 1.00E-01 | 47 | 25 | 22 | 20 | 10 |
| 1.00E-02 | 39 | 21 | 18 | 4 | 10 |
| 1.00E-03 | 30 | 16 | 14 | 4 | 9 |
| 1.00E-04 | 20 | 12 | 8 | 4 | 6 |
| 1.00E-05 | 14 | 7 | 7 | 2 | 5 |
| 1.00E-08 | 2 | 1 | 1 | 0 | 1 |
Correct pos, correct positive; Correct neg, correct negative.