Table 2.
The interacting Polar residues, hydrophobic interactions, and binding affinities of either n-hexadecanoic acid or L-carnitine with SIRT1.
| Molecular target and PDB code | Ligand | Hydrogen bond analysis | Amino acids involved in lipophilic analysis* | 2D ligand/protein interaction | Binding affinity (kcal/ mol) | |
|
Hydrogen bonds ligand/ Protein |
Distance (Å) | |||||
| SIRT1 (AZZJ) | n-hexadec-anoic acid |
|
3 | LEU206, ILE223 and ILE227 |
|
-3.8 |
| L-carnitine |
|
2.3 | ILE223 and ILE227 |
|
-2.6 | |