Table 1.
Genes of high transcript concentration in cervix cancer
| HUGO Gene symbol | Cervix tumour mean (×109) | Lower limit conf. int. (×109) | Upper limit conf. int. (×109) | Probability in top 20 | Reporter ID number | Gene ontology information |
|---|---|---|---|---|---|---|
| Genes of high transcript concentration in cervix cancer | ||||||
| TMSB4X | 9.05 | 7.71 | 9.33 | 1 | 868368 | Growth |
| HLA-A | 7.83 | 5.54 | 8.16 | 1 | 853906 | Immune response |
| S100A8 | 7.02 | 4.61 | 7.43 | 1 | 562729 | Immune response |
| HLA-C | 6.76 | 4.90 | 7.07 | 1 | 810142 | Immune response |
| KRT5 | 5.68 | 3.56 | 5.97 | 1 | 592540 | Unknown |
| KRT19 | 5.22 | 3.12 | 5.68 | 1 | 810131 | Unknown |
| S100A2 | 5.02 | 2.47 | 5.57 | 0.98 | 810813 | Unknown |
| FABP5 | 4.85 | 2.47 | 5.73 | 0.99 | 281039 | Growth |
| IGLC2 | 4.45 | 3.98 | 4.63 | 1 | 66560 | Immune response |
| RPS16 | 4.27 | 3.40 | 4.44 | 1 | 853151 | Metabolism |
| 701677 | 3.62 | 1.74 | 4.36 | 0.89 | Unknown | |
| RPS27A | 3.47 | 2.50 | 3.67 | 0.99 | 877827 | Unknown |
| IGHG1 | 3.38 | 2.04 | 3.60 | 0.94 | 289337 | Unknown |
| S100A10 | 3.11 | 1.92 | 3.28 | 0.89 | 756595 | Unknown |
| 753862 | 2.97 | 1.92 | 3.15 | 0.88 | Immune response | |
| LAMR1 | 2.91 | 1.97 | 3.14 | 0.89 | 884644 | Cell communication |
| Signal transduction | ||||||
| ITGA3 | 2.89 | 1.57 | 3.54 | 0.76 | 755402 | Cell communication |
| Signal transduction | ||||||
| 207029 | 2.83 | 1.97 | 3.02 | 0.86 | Unknown | |
| TRAM2 | 2.73 | 1.56 | 4.00 | 0.77 | 207550 | Growth |
| CPA4 | 2.36 | 1.22 | 3.05 | 0.48 | 359285 | Growth |
| Metabolism | ||||||
Mean transcript concentration (number of transcripts per µg total RNA) based on 12 tumours, lower and upper limit of the 95% confidence interval and the probability to be among the 20 genes with highest transcript concentration are listed. Background was very low and intensities were hence not corrected for this. Genes or ESTs without symbol are indicated by their probe identification number.