Table 2.
List of seven genes located within 50 kb upstream or downstream and dosest to the four SNP markers identified in Table 1 , which are associated with the disease severity index (DSI) for Stemphylium leaf spot resistance in 311 spinach accessions.
Gene | Chr | Start_pos | End_pos | Gene name | SNP | Chr | Pos | Distance from gene_start | from gene_end | Comment |
---|---|---|---|---|---|---|---|---|---|---|
SOV1g040270 | 1 | 127752039 | 127753611 | CASP-like protein | SOVchr1_127757911 | 1 | 127757911 | 5872 | 4300 | <5kb |
SOV1g040280 | 1 | 127753403 | 127755510 | photosynthetic NDH subunit of lumenal location 2, chloroplastic | 4508 | 2401 | <2.5kb | |||
SOV2g005490 | 2 | 21945470 | 21946359 | Unknown protein | SOVchr2_21962694 | 2 | 21962694 | 17224 | 16335 | <17kb |
SOV2g005500 | 2 | 22027716 | 22032032 | CRS2-associated factor 1, chloroplastic | -65022 | -69338 | <66kb | |||
SOV4g030080 | 4 | 114632566 | 114633635 | Gamma-interferon-inducible lysosomal thiol reductase | SOVchr4_114674293 | 4 | 114674293 | 41727 | 40658 | <41kb |
SOV4g030090 | 4 | 114718128 | 114723113 | Basic-leucine zipper domain | -43835 | -48820 | <44kb | |||
no gene in the region of 100 Kb | SOVchr5_37417509 | 5 | 37417509 | |||||||
SOV5g021190 | 5 | 37515001 | 37517838 | Fe2OG dioxygenase domain-containing protein | -97492 | -100329 | <100kb |