Table 1:
List of pre-specified single nucleotide polymorphisms (SNPs) not included in GRS2
| SNP | Gene | Chromosome | Position | Alleles | MAF |
|---|---|---|---|---|---|
| rs111776337 | MRPS21-PRPF3 | 1 | 150319828 | C>T | 0.048 |
| rs1990760 | IFIH1 | 2 | 162267541 | T>C | 0.389 |
| rs1534422 | MIR3681HG | 2 | 12500615 | A>G | 0.469 |
| rs55900661 | NRIR | 2 | 6808849 | G>A | 0.055 |
| rs77967786 | COL6A6 | 3 | 130594375 | G>A | 0.034 |
| rs11705721 | PXK/PDHB | 3 | 58414687 | T>C | 0.353 |
| rs10517086 | LINC02357/RBPJ | 4 | 26083889 | G>A | 0.303 |
| rs2327832 | TNFAIP3 | 6 | 137651931 | A>G | 0.204 |
| rs73043122 | RNASET2 | 6 | 166969779 | G>C | 0.018 |
| rs7804356 | SKAP2 | 7 | 26852046 | T>C | 0.224 |
| rs7020673 | GLIS3 | 9 | 4291747 | G>C | 0.457 |
| rs113306148 | PLEKHA1 | 10 | 122400322 | C>T | 0.012 |
| rs12251307 | IL2RA | 10 | 6081532 | C>T | 0.108 |
| rs689 | INS | 11 | 2160994 | T>A | 0.201 |
| rs1004446 | INS | 11 | 2148913 | G>A | 0.323 |
| rs3184504 | SH2B3 | 12 | 111446804 | C>T | 0.491 |
| rs2292239 | ERBB3 | 12 | 56088396 | G>T | 0.378 |
| rs3825932 | CTSH | 15 | 78943104 | C>T | 0.346 |
| rs4788084 | IL27 | 16 | 28528527 | C>T | 0.385 |
| rs763361 | CD226 | 18 | 69864406 | C>T | 0.495 |
| rs12151883 | TASP1 | 20 | 13394404 | T>A | 0.050 |
| rs3788013 | UBASH3A | 21 | 42421219 | C>A | 0.457 |
| rs11203203 | UBASH3A | 21 | 42416077 | G>A | 0.389 |
MAF: minor allele frequency based on the single confirmed autoantibody positive participants (N = 4,314)
Position: Based on the Genome Reference Consortium Human Build 38