TABLE 3.

Alignment statistics for the fungal and algal reference genomes.

	UhA		UhiL		CkuR		Csu1
	Mycobiont	Photobiont	Mycobiont	Photobiont	Mycobiont	Photobiont	Mycobiont	Photobiont
No. of reads in total	577,215,276		828,317,204		1,285,703,014		1,053,275,480
No. of reads after trim (paired)	577,203,280		828,300,460		1,285,470,696		1,053,080,774
No. of aligned reads	15,456,331	68,253,919	42,305,402	64,475,607	295,541,695	38,558,799	245,465,337	54,781,855
% of aligned reads	2.68	11.82	5.11	7.78	22.99	3.00	23.31	5.20
Average read length (bp)	40.60	45.17	39.46	43.57	46.16	45.9	43.53	41.81
Fraction of reference covered (%)	73	92	81	94	99	99	97	98
Average coverage	14.73	49.67	39.24	40.23	424.67	31.45	332.33	40.58