TABLE 2.
Summary of the transcriptional and translational features of the BAV-3 genome
| Region | Gene | Transcription start site | ATG | Splice donor site | Splice acceptor site | Poly(A) signal(s) | Poly(A) site(s) |
|---|---|---|---|---|---|---|---|
| E1Aa | 211R | 296–298 | 606 | 1215 | 1323 | 3577, 3612 | 3601, 3618, 3632, 3637 |
| 2073 | 3326 | ||||||
| E1Ba | 157R | 1452 | 1476 | 2073 | 3326 | 3577, 3612 | 3601, 3618, 3632, 3637 |
| 420R | 1452 | 1850 | 3577, 3612 | 3601, 3618, 3632, 3637 | |||
| pIXa | pIX | 3161 | 3200 | Nd | N | 3612 | 3632, 3737 |
| E2A | DBP | 24528cb | 22582c | 24468c | 23373c | 21202c | 21175c |
| 23297 | 22591c | ||||||
| E2B | TP | NAc | 9958c | NA | NA | 3627c | 3601c, 3604c |
| Pol | NA | 7790c | NA | NA | 3627c | 3601c, 3604c | |
| IVa2 | IVa2 | NA | 4740c | N | N | 3603c | NA |
| E3a | 284R | 26184 | 26512 | N | N | 27754 | 27776, 27777 |
| 121R | 26184 | 27377 | 26458 | 27151 | 27752 | 27776, 27777 | |
| E4a | 268R | 33950c | 32829c | 33914c | 33635c | 30952c | 30932c |
| 143R | 33950c | 32001c | 33914c | 32003c | 30952c | 30932c | |
| 219 | 33950c | 31631c | 33914c | 31651c | 30952c | 30932c | |
| L1 | 52K | 5587 | 9988 | 9162 | 9988 | 14974 | 14999 |
| IIIA | 5587 | 11098 | 9162 | NA | 14974 | 14999 | |
| III | 5587 | 12919 | 9162 | 12909 | 14974 | 14999 | |
| pVII | 5587 | 14433 | 9162 | 14419 | 14974 | 14999 | |
| L2 | pV | 5587 | 15068 | 9162 | 15016 | 16371 | 16399 |
| L3 | pX | 5587 | 16469 | 9162 | 16444 | 16738 | 16760 |
| L4 | pVI | 5587 | 16871 | 9162 | 16835 | 17679 | 17700 |
| L5 | Hexon | 5587 | 17809 | 9162 | 17763 | 21209 | 21227 |
| Protease | 5587 | 20545 | 9162 | 20537 | 21209 | 21227 | |
| L6 | 100K | 5587 | 22609 | 9162 | 22596 | 27754 | 27776, 27777 |
| 33K | 5587 | 24794 | 9162 | 24788 | 27754 | 27776, 27777 | |
| pVIII | 5587 | 25803 | 9162 | 25723 | 27754 | 27776, 27777 | |
| L7 | Fiber | 5587 | 27968 | 9162 | 27926 | 30909 | 30926 |