Table 5.
Genes involved in indole-3-acetic acid (IAA) synthesis
| Pathway | Gene ID | Name | Location | Annotation Results |
|---|---|---|---|---|
| IAA synthesis | gene0064 | speA | 761,414~763,327+ | Arginine decarboxylase |
| gene0848 | speC | 968,517~967,354− | Proline decarboxylase | |
| gene 0048 | trpA | 53,792~52,983− | Tryptophan synthase | |
| gene 0049 | trpB | 55,033~53,792− | Tryptophan synthase | |
| gene 0232 | trpG | 281,056~280,472− | Indolepyruvate synthetase | |
| gene 0233 | trpE | 282,456~281,053− | Indolepyruvate synthetase | |
| gene 3961 | trpF | 4,493,353~4,492,721− | Indolepyruvate synthetase | |
| gene 0166 | trpC | 174,215~173,379*− | Indolepyruvate synthetase | |
| gene 0167 | trpD | 175,261~174,212*− | Indolepyruvate synthetase | |
| gene 0168 | trpG | 175,864~175,271*− | Indolegate synthase | |
| gene 0170 | trpE | 179,823~178,342*− | Indolepyruvate synthetase | |
| gene 2760 | aldA | 3,156,441~3,157,865+ | Acetaldehyde dehydrogenase | |
| gene 3794 | aldB | 4,317,662~4,316,142− | Acetaldehyde dehydrogenase | |
| gene 0035 | aldB | 33,861~35,381*+ | Acetaldehyde dehydrogenase | |
| gene 1886 | aldH | 2,071,370~2,072,956+ | Aldehyde dehydrogenase | |
| gene 1958 | aldH | 2,147,151~2,148,728+ | Aldehyde dehydrogenase | |
| gene 2327 | aldH | 2,653,725~2,655,305+ | Aldehyde dehydrogenase | |
| gene 3215 | aldH | 3,661,588~3,663,159+ | Aldehyde dehydrogenase | |
| gene 0101 | amiD | 103,048~103,824+ | Acyltransferases | |
| gene 1390 | amiE | 1,567,156~1,568,598+ | N-acetylated amide synthetase | |
| gene 2491 | amiE | 2,836,505~2,837,539+ | N-acetylated amide synthetase | |
| gene 3290 | amiE | 3,746,372~3,748,078+ | N-acetylated amide synthetase | |
| gene 3500 | amiE | 3,882,562~3,984,076+ | N-acetylated amide synthetase | |
| gene 4542 | amiE | 5,127,932~5,126,415− | N-acetylated amide synthetase | |
| gene 0543 | miaA | 639,908~640,879+ | Isoprenoyl CoA synthase | |
| gene 0834 | miaB | 933,738~935,066*+ | 5-Methylisoprenoic acid carboxylase | |
| gene 3318 | miaE | 3,777,366~3,776,764− | N6-acetyllysine transferase |
The “*” behind the gene position indicates that the gene is on the plasmid
The gene location column is from start to end, where start < end represents the sense strand (marked with “+”), and start > end represents the antisense strand (marked with “−”)