| ABSINTH | self-assembly of biomolecules studied by an implicit, novel, and tunable Hamiltonian |
| APBS | Adaptive Poisson–Boltzmann Solver |
| ASA | Accessible surface area |
| CFA | Coulomb area approximation |
| CHA | The charge hydration asymmetry |
| COSMO | Conductor-like Screening Model |
| COSMO-RS | Conductor-like Screening Model-Real Solvent |
| DMFI | Direct mean-field interaction |
| FDBB | Finite-Difference Poisson–Boltzmann |
| GB | Generalized Born model |
| GBNSR6 | Generalized Born R6 version |
| IDPs | Intrinsically disordered proteins |
| IWM-GB | Implicit water multipole Generalized Born |
| MD | Molecular dynamics |
| ML | Machine learning |
| PB | Poisson–Boltzmann equation |
| PCM | Polarizable Continuum Model |
| PDB | Finite-difference Poisson |
| PGNN | Physics-Guided Neural Network |
| SAV | Solvent-accessible volume |
| S-GB | Surface Generalized Born |
| SMD | Solvation Model based on Density |
| VISM | Level-Set Variational Implicit-Solvent Model |
| BE | Boundary Element |
| MBE | Multigrid Boundary Element |
| VHS | Exposed Volume of the Hydration Shell |
| UNRES | United Residue Force Field |
| SQD | Sample-Based Quantum Diagonalization |
| IEF-PCM | Integral Equation Formalism Polarizable Continuum Model |
| PBML | Poisson–Boltzmann–based machine learning |