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. 2025 Aug 23;15(9):1218. doi: 10.3390/biom15091218
ABSINTH self-assembly of biomolecules studied by an implicit, novel, and tunable Hamiltonian
APBS Adaptive Poisson–Boltzmann Solver
ASA Accessible surface area
CFA Coulomb area approximation
CHA The charge hydration asymmetry
COSMO Conductor-like Screening Model
COSMO-RS Conductor-like Screening Model-Real Solvent
DMFI Direct mean-field interaction
FDBB Finite-Difference Poisson–Boltzmann
GB Generalized Born model
GBNSR6 Generalized Born R6 version
IDPs Intrinsically disordered proteins
IWM-GB Implicit water multipole Generalized Born
MD Molecular dynamics
ML Machine learning
PB Poisson–Boltzmann equation
PCM Polarizable Continuum Model
PDB Finite-difference Poisson
PGNN Physics-Guided Neural Network
SAV Solvent-accessible volume
S-GB Surface Generalized Born
SMD Solvation Model based on Density
VISM Level-Set Variational Implicit-Solvent Model
BE Boundary Element
MBE Multigrid Boundary Element
VHS Exposed Volume of the Hydration Shell
UNRES United Residue Force Field
SQD Sample-Based Quantum Diagonalization
IEF-PCM Integral Equation Formalism Polarizable Continuum Model
PBML Poisson–Boltzmann–based machine learning