TABLE 3.
Comparison of the N-terminal amino acid sequence of the V. anguillarum 40-kDa MOMP with those of other bacterial porin proteins
| Protein (reference) | Sequencea | % Identityb | % Similarityc |
|---|---|---|---|
| V. anguillarum O2 40-kDa MOMP (this study) | TELYNQDGTS LEMGGR | ||
| V. anguillarum Omp35La (36) | GELYNQDGTS LEMGGRAEAR | 93.7 | 93.7 |
| H. somnus 40-kDa MOMP (37) | TTVYNQNGTKVDVGGR | 56.0 | 87.0 |
| H. influenzae type b P2 (11, 20) | AVVYNNEGTNVE LGGR | 50.0 | 81 |
| E. coli OmpC (18) | AEVYNKDGNKLDLYGK | 44.0 | 69 |
| P. maltocida 32-kDa MOMP (16) | ATVYNQDGTKVDVNGS | 44 | 69 |
a
Conserved residues are in boldface. The terminal amino acids of the V. anguillarum O2 40-kDa protein and Omp35La are underlined.
b
Identity of the first 16 amino acids with the V. anguillarum 40-kDa MOMP.
c
Similarity of the first 16 amino acids with the V. anguillarum 40-kDa MOMP.