ABC	ATP-Binding Cassette
ADS	Amorpha-4,11-Diene Synthase
AI	Artificial Intelligence
ALDH1	Aldehyde Dehydrogenase 1
ATAC-seq	Assay for Transposase-Accessible Chromatin with high-throughput sequencing
ATP	Adenosine Triphosphate
BE	Base Editing
ChIP-seq	Chromatin Immunoprecipitation sequencing
COX-2	Cyclooxygenase-2
CPR	Cytochrome P450 Reductase
CRISPR	Clustered Regularly Interspaced Short Palindromic Repeats
CRISPR-Cas9	CRISPR-associated protein 9
CRISPRi	CRISPR interference
CYP	Cytochrome P450
DMAPP	Dimethylallyl Diphosphate
DXS	1-Deoxy-D-Xylulose-5-Phosphate Synthase
EFSA	European Food Safety Authority
ER	Endoplasmic Reticulum
FAD3	Fatty Acid Desaturase 3
FPP	Farnesyl Diphosphate
G6PDH	Glucose-6-Phosphate Dehydrogenase
GA3	Gibberellin A3
GC-MS	Gas Chromatography-Mass Spectrometry
GEMs	Genome-scale Metabolic Models
GGPP	Geranylgeranyl Diphosphate
GMO	Genetically Modified Organism
GPP	Geranyl Diphosphate
GRNs	Gene Regulatory Networks
HMG-CoA	3-Hydroxy-3-Methylglutaryl-CoA
HMGR	3-Hydroxy-3-Methylglutaryl-CoA Reductase
HRMS	High-Resolution Mass Spectrometry
IDI	Isopentenyl Diphosphate Isomerase
IMS	Ion Mobility Spectrometry
IPK	Isopentenyl Phosphate Kinase
IPP	Isopentenyl Diphosphate
iNOS	Inducible Nitric Oxide Synthase
IUP	Isopentenol Utilization Pathway
JA	Jasmonate
JAZ	Jasmonate ZIM-domain
LC-MS/MS	Liquid Chromatography-Tandem Mass Spectrometry
MAFF	Ministry of Agriculture, Forestry and Fisheries (Japan)
MD	Molecular Dynamics
MeJA	Methyl Jasmonate
MEP	Methylerythritol Phosphate pathway
ML	Machine Learning
MVA	Mevalonate pathway
NADPH	Nicotinamide Adenine Dinucleotide Phosphate (reduced form)
NF-κB	Nuclear Factor kappa B
NMR	Nuclear Magnetic Resonance
OptoAMP	Optogenetic Amplification
oxPPP	Oxidative Pentose Phosphate Pathway
PAL	Phenylalanine Ammonia-Lyase
PDH	Pyruvate Dehydrogenase
PE	Prime Editing
PEPC	Phosphoenolpyruvate Carboxylase
POR	Protochlorophyllide Oxidoreductase
PSY	Phytoene Synthase
PTMs	Post-Translational Modifications
RNAi	RNA Interference
RNA-seq	RNA Sequencing
RNP	Ribonucleoprotein
ROS	Reactive Oxygen Species
SA	Salicylic Acid
scRNA-seq	Single-cell RNA Sequencing
SDN-1	Site-Directed Nuclease 1
SEM	Structural Equation Modeling
SQS	Squalene Synthase
SRM	Selected Reaction Monitoring
SWATH-MS	Sequential Window Acquisition of All Theoretical Mass Spectra
TF	Transcription Factor
TLA	Three Letter Acronym (included as per example)
TMT	Tandem Mass Tag
TPS	Terpene Synthase
UGT	UDP-Glycosyltransferase
USDA	United States Department of Agriculture
VIGS	Virus-Induced Gene Silencing
WGCNA	Weighted Gene Co-expression Network Analysis