LLPS	liquid–liquid phase separation
RRM	RNA recognition motif
P-bodies	processing bodies
IDR	intrinsically disordered region
MLO	membraneless organelles
PTM	post-translational modification
CC	coiled coil
LC	low complexity
U(L)CST	upper(lower) critical solution temperature
SUMO	Small Ubiquitin-like Modifier
RBPs	RNA binding proteins
H3K27me3	trimethylation of lysine 27 in histone H3
Cdc19	yeast pyruvate kinase
FRQ	clock gene frequency
FRH	FRQ-interacting RNA helicase
WCC	White Collar Complex
WC-1	White Collar protein-1
VVD	VIVID protein
HMM	hidden Markov-like model
PSSMs	position-specific scoring matrices
PDB	protein data bank
ncRNA	non-coding RNA
kAAP	k-spaced amino acid pairs
Fol	Fusarium oxysporum f. sp. lycopersici
UA	ursolic acid
RNPGs	ribonucleoprotein granules
Pum2	Pumilio2 homology domain
EMP	Embden–Meyerhoff–Paranas
PY	phosphotyrosine
PLD	prion-like domain
PSPs	phase-separating proteins
SG	stress granule
LCR	low complex region
cmRNPs	circadian ribonucleoprotein granules
LARKS	low-complexity aromatic-rich kinked segments
FUS	fused in sarcoma protein
ELP	elastin-like polypeptides
RLR	resilin-like polypeptides
SH3	SRC-homology 3 domains
eIF2α	eukaryotic translation initiation factor 2α
SlISP	iron-sulfur protein
Pex	peroxisomal proteins
PPAT	PRPP amidotransferase
BP1	Bromo-adjacent homology-plant homeodomain domain containing protein 1
IDR2	intrinsically disordered region 2 of BP1
CK1	Casein Kinase 1
Pab1	Poly(A)-binding protein1
TPOT	Tree-based Pipeline Optimization Tool
GBDT	gradient boosting decision tree
LM	language model
CLRC	Cryptic Loci Regulator complex,
TEV	tobacco etch virus
ManNAc	N-acetylmannosamine
ncAAs	noncanonical amino acids
ELRs	eastin-like recombinames
IDPPs	intrinsically disordered protein polymers
NOG	non-oxidative glycolysis
AKAPs	A kinase-anchoring proteins