Table 2.
Melting temperatures and extent of RNA:RNA duplex destabilization by modified UNAa
| ID | Sequence 5′-UACAGXCUAUGU-3′ | T m [°C] | (ΔTm) [°C] |
|---|---|---|---|
| ON 1 | X = U | 61.1 | |
| ON 4 | X = UNA | 43.6 | −17.5 |
| ON 5 | X = 5′-(S)-Me-UNA | 43.3 | −17.8 |
| ON 6 | X = 5′-(R)-Me-UNA | 42.5 | −18.6 |
| ON 7 | X = 2′-(S)-Me-UNA | 42.4 | −18.7 |
| ON 8 | X = 2′-(R)-Me-UNA | 42.6 | −18.5 |
| ON 9 | X = 3′-(S)-Me-UNA | 42.1 | −19.0 |
| ON 10 | X = 3′-(R)-Me-UNA | 43.3 | −17.8 |
| ON 11 | X = 4′-(β)-methoxy-UNA | 45.4 | −15.7 |
aThe absorbances of hybridized duplexes formed by indicated sequence with 3′-AUGUCAGAUACA)-5′ (2.5 μM each strand) at 260 nm were determined as a function of temperature in PBS. The Tm was determined as the maximum of the first derivative of the melting curve. Values are reported as the average of two independent experiments. ΔTm was calculated with respect to the unmodified RNA duplex. Reported values are an average of six determinations using the Varian Cary Bio-300 built-in software, with standard deviation reported.