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. 2025 Sep 29;53(18):gkaf937. doi: 10.1093/nar/gkaf937

Table 4.

Sequences of siRNAs used for in vivo study and Tm values

siRNA Modification at position 7 of antisense strand Sequences (5′ -3′)a T m [°C]b ΔTm [°C]c
si9 - a•g•uguuCuUGCucuauaaaca* 87.27 -
    u•G•uuuauagagcaAgAacacu•g•u    
si10 UNA a•g•uguuCuUGCucuauaaaca* 81.97 -5.30
    u•G•uuuaUagagcaAgAacacu•g•u    
si11 5′-(S)-Me-UNA a•g•uguuCuUGCucuauaaaca* 81.97 -5.30
    u•G•uuuaU5SagagcaAgAacacu•g•u    
si12 5′-(R)-Me-UNA a•g•uguuCuUGCucuauaaaca* 82.02 -5.25
    u•G•uuuaU5RagagcaAgAacacu•g•u    
si13 2′-(S)-Me-UNA a•g•uguuCuUGCucuauaaaca* 83.02 -4.25
    u•G•uuuaU2SagagcaAgAacacu•g•u    
si14 2′-(R)-Me-UNA a•g•uguuCuUGCucuauaaaca* 82.12 -5.15
    u•G•uuuaU2R agagcaAgAacacu•g•u    
si15 3′-(S)-Me-UNA a•g•uguuCuUGCucuauaaaca* 81.97 -5.30
    u•G•uuuaU3S agagcaAgAacacu•g•u    
si16 3′-(R)-Me-UNA a•g•uguuCuUGCucuauaaaca* 81.97 -5.30
    u•G•uuuaU3R agagcaAgAacacu•g•u    
si17 4′-(β)-OMe-UNA a•g•uguuCuUGCucuauaaaca* 82.97 -4.30
    u•G•uuuaU4bagagcaAgAacacu•g•u    

aUppercase letters, 2′-F nucleotides; lowercase letters, 2′-OMe nucleotides; U, UNA; U5S, 5′-(S)-Me-UNA; U5R, 5′-(R)-Me-UNA; U2S, 2′-(S)-Me-UNA; U2R, 2′-(R)-Me-UNA; U3S, 3′-(S)-Me-UNA; U3R, 3′-(R)-Me-UNA; U4β, 4′-(β)-methoxy-UNA;• phosphorothioate linkages; *, trivalent GalNAc ligand.

bThe absorbances of hybridized duplexes (2.5 μM) at 260 nm were determined as a function of temperature in PBS. The Tm was determined as the maximum of the first derivative of the melting curve. Values are reported as the average of two independent experiments.

cΔTm was calculated with respect to si9.