Table 4.
Sequences of siRNAs used for in vivo study and Tm values
| siRNA | Modification at position 7 of antisense strand | Sequences (5′ -3′)a | T m [°C]b | ΔTm [°C]c |
|---|---|---|---|---|
| si9 | - | a•g•uguuCuUGCucuauaaaca* | 87.27 | - |
| u•G•uuuauagagcaAgAacacu•g•u | ||||
| si10 | UNA | a•g•uguuCuUGCucuauaaaca* | 81.97 | -5.30 |
| u•G•uuuaUagagcaAgAacacu•g•u | ||||
| si11 | 5′-(S)-Me-UNA | a•g•uguuCuUGCucuauaaaca* | 81.97 | -5.30 |
| u•G•uuuaU5′SagagcaAgAacacu•g•u | ||||
| si12 | 5′-(R)-Me-UNA | a•g•uguuCuUGCucuauaaaca* | 82.02 | -5.25 |
| u•G•uuuaU5′RagagcaAgAacacu•g•u | ||||
| si13 | 2′-(S)-Me-UNA | a•g•uguuCuUGCucuauaaaca* | 83.02 | -4.25 |
| u•G•uuuaU2′SagagcaAgAacacu•g•u | ||||
| si14 | 2′-(R)-Me-UNA | a•g•uguuCuUGCucuauaaaca* | 82.12 | -5.15 |
| u•G•uuuaU2′R agagcaAgAacacu•g•u | ||||
| si15 | 3′-(S)-Me-UNA | a•g•uguuCuUGCucuauaaaca* | 81.97 | -5.30 |
| u•G•uuuaU3′S agagcaAgAacacu•g•u | ||||
| si16 | 3′-(R)-Me-UNA | a•g•uguuCuUGCucuauaaaca* | 81.97 | -5.30 |
| u•G•uuuaU3′R agagcaAgAacacu•g•u | ||||
| si17 | 4′-(β)-OMe-UNA | a•g•uguuCuUGCucuauaaaca* | 82.97 | -4.30 |
| u•G•uuuaU4′bagagcaAgAacacu•g•u |
aUppercase letters, 2′-F nucleotides; lowercase letters, 2′-OMe nucleotides; U, UNA; U5′S, 5′-(S)-Me-UNA; U5′R, 5′-(R)-Me-UNA; U2′S, 2′-(S)-Me-UNA; U2′R, 2′-(R)-Me-UNA; U3′S, 3′-(S)-Me-UNA; U3′R, 3′-(R)-Me-UNA; U4′β, 4′-(β)-methoxy-UNA;• phosphorothioate linkages; *, trivalent GalNAc ligand.
bThe absorbances of hybridized duplexes (2.5 μM) at 260 nm were determined as a function of temperature in PBS. The Tm was determined as the maximum of the first derivative of the melting curve. Values are reported as the average of two independent experiments.
cΔTm was calculated with respect to si9.