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. 2025 Sep 30;12:RP90607. doi: 10.7554/eLife.90607

Table 3. Plasmids used in this study.

Plasmid Name Description Cloning Method or Source
pBBR1-NheI empty vector with pBBR1 origin. Gibbs et al., 2008
pLMW04-gfp GFPmut2 with a constitutive fla promoter, (pBBR1 origin, Kan resistance). Wenren et al., 2013
pDS0002 rdnE with the anhydrotetracycline (aTc)-inducible promoter, Ptet, (pBBR1 origin, Kan resistance) gDS0005 was recombined into amplified pAS1054 by SliCE
pDS0062 gfpmut2 with the aTc-inducible promoter, (pBBR1 origin, Kan resistance) restriction digest using amplified gfpmut2 and pDS0002
pDS0048 rdnED39A-FLAG with the aTc-inducible promoter, (pBBR1 origin, Kan resistance) gDS0025 was recombined into pDS0002 using restriction digest
pDS0058 rdnED39A with the aTc-inducible promoter, (pBBR1 origin, Kan resistance) pDS0048 was recombined into pDS0002 using restriction digest
pDS0059 rdnEE53A with the aTc-inducible promoter, (pBBR1 origin, Kan resistance) gDS0026 was recombined into pDS0002 using restriction digest
pDS0060 rdnEK55A with the aTc-inducible promoter, (pBBR1 origin, Kan resistance) gDS0027 was recombined into pDS0002 using restriction digest
pDS0061 rdnED39A, E53A, K55A with the aTc-inducible promoter, (pBBR1 origin, Kan resistance) gDS0028 was recombined into pDS0002 using restriction digest
pDS0034 rdnE-FLAG with the aTc-inducible promoter, (pBBR1 origin, Kan resistance) gDS0023 was recombined into amplified pDS0002 using SliCE
pDS0003 rdnE-rdnI with the aTc-inducible promoter, (pBBR1 origin, Kan resistance) Amplified rdnE-rdnI from pAS1059 was recombined into pDS0002 using SOE PCR
pAK023 rdnI-StrepII with the T7 promoter, (pUC, Amp resistance) gAK001 and pDS0003 were recombined into pET17b vector using SOE PCR
pAK043 rdnI-StrepII with the fla promoter, (pBBR1 origin, Kan resistance) rdnI-StrepII amplified from pAK023 was recombined into pLMW04 using restriction digest
pAK070 T25-linker-rdnED39A-FLAG with the IPTG-inducible lac promoter, (p15A, Kan resistance) rdnED39A-FLAG tag amplified from pDS0048 was recombined into pKT25 using restriction digest
pAK071 T25-linker-rdnI with the lac promoter, (p15A, Kan resistance) rdnI-Strep-II amplified from pAK043 was recombined into pKT25 using restriction digest
pAK074 T18-linker-rdnED39A-FLAG with the lac promoter, (Col E1 origin, Amp resistance) rdnED39A-FLAG tag amplified from pDS0048 was recombined into pUT18C using restriction digest
pAK075 T18-linker-rdnI-StrepII with the lac promoter, (Col E1 origin, Amp resistance) rdnI-Strep-II tag amplified from pAK043 was recombined into pUT18C using restriction digest
pAK076 T25-gfpmut2 with the lac promoter, (p15A origin, Kan resistance) Amplified gfpmut2 was recombined into pKT25 using restriction digest
pAK077 T18-gfpmut2 with the lac promoter, (Col E1 origin, Amp resistance) Amplified gfpmut2 was recombined into pUT18C using restriction digest
pAK044 RothiardnI-StrepII with the fla promoter, (pBBR1 origin, Kan resistance) gAK003 was recombined into pAK043 using restriction digest
pAK045 PrevotellardnI-StrepII with the fla promoter, (pBBR1 origin, Kan resistance) gAK004 was recombined into pAK043 using restriction digest
pAK046 PseduomonasrdnI-StrepII with the fla promoter, (pBBR1 origin, Kan resistance) gAK005 was recombined into pAK043 using restriction digest
pAK079 T18-RothiardnI-StrepII with the lac promoter, (pUC, Amp resistance) gAK003 was recombined into pUT18C using restriction digest
pAK081 T18-PrevotellardnI-StrepII with the lac promoter, (pUC, Amp resistance) gAK004 was recombined into pUT18C using restriction digest
pAK083 T18-PseudomonasrdnI-StrepII with the lac promoter, (pUC, Amp resistance) gAK005 was recombined into pUT18C using restriction digest
pAK058 RothiardnI-StrepII with the T7 promoter, (pUC, Amp resistance) gAK003 was recombined into pAK023 using restriction digest
pAK059 PrevotellardnI-StrepII with the T7 promoter, (pUC, Amp resistance) gAK004 was recombined into pAK023 using restriction digest
pAK060 PseudomonasrdnI-StrepII with the T7 promoter, (pUC, Amp resistance) gAK005 was recombined into pAK023 using restriction digest
pAK063 Sequence optimized rdnI-StrepII with the fla promoter, (pBBR1 origin, Kan resistance) gAK024 was recombined into pAK043 using restriction digest
pAK065 Pm/RdrdnI-StrepII (Proteus rdnI with Rothia conserved motif insert) with the fla promoter, (pBBR1 origin, Kan resistance) gAK026 was recombined into pAK043 using restriction digest
pAK066 Pm/PjrdnI-StrepII (Proteus rdnI with Prevotella conserved motif insert) with the fla promoter, (pBBR1 origin, Kan resistance) gAK028 was recombined into pAK043 using restriction digest
pAK067 Pm/PordnI-StrepII (Proteus rdnI with Pseudomonas conserved motif insert) with the fla promoter, (pBBR1 origin, Kan resistance) gAK027 was recombined into pAK043 using restriction digest
pAK086 Pj/PmrdnI-StrepII (Prevotella rdnI with Proteus conserved motif insert) with the fla promoter, (pBBR1 origin, Kan resistance) gAK029 was recombined into pAK043 using restriction digest
pAK087 Pf/PmrdnI-StrepII (Pseudomonas rdnI with Proteus conserved motif insert) with the fla promoter, (pBBR1 origin, Kan resistance) gAK030 was recombined into pAK043 using restriction digest
pAK092 T18-linker-Sequence optimized ProteusrdnI with a C-terminal StrepII with the lac promoter (Col E1 origin, Amp resistance) gAK024 was recombined into pAK075 using restriction digest
pAK093 T18-linker-Sequence optimized Pm/RardnI (Proteus rdnI with Rothia conserved motif insert) with a C-terminal StrepII with the lac promoter (Col E1 origin, Amp resistance) gAK026 was recombined into pAK075 using restriction digest
pAK094 T18-linker-Sequence optimized Pm/PjrdnI (Proteus rdnI with Prevotella conserved motif insert) with the lac promoter (Col E1 origin, Amp resistance) gAK028 was recombined into pAK075 using restriction digest
pAK095 T18-linker-Sequence optimized Pm/PfrdnI (Proteus rdnI with Pseudomonas conserved motif insert) with the lac promoter (Col E1 origin, Amp resistance) gAK027 was recombined into pAK075 using restriction digest
pAK096 T18-linker- Pj/PmrdnI (Prevotella rdnI with Proteus conserved motif insert) with the lac promoter (Col E1 origin, Amp resistance) gAK029 was recombined into pAK075 using restriction digest
pAK097 T18-linker-Pf/PmrdnI (Pseudomonas rdnI with Proteus conserved motif insert) with a C-terminal StrepII with the lac promoter (Col E1 origin, Amp resistance) gAK030 was recombined into pAK075 using restriction digest
pAK064 Sequence optimized rdnI7mut -StrepII with the fla promoter, (pBBR1 origin, Kan resistance) gAK025 was recombined into pAK043 using restriction digest
pAK085 T18-linker-Sequence optimized rdnI7mut-StrepII with the lac promoter (Col E1 origin, Amp resistance) gAK025 was recombined into pAK075 using restriction digest