Table 1.
The set of primers used for the Mycobacterium tuberculosis complex (MTBC) and nontuberculous mycobacteria (NTM) detection LAMP assay in this study.
| Species (target) | Primers | Sequence (5’ to 3’) |
|---|---|---|
| MTBC (IS6110) |
F3 | GGTCGGAAGCTCCTATGA |
| B3 | GTTGAGCGTAGTAGGCAG | |
| FIP | GGGCTTGCCGGGTTTGATCAATGCACTAGCCGAGAC | |
| BIP | GTCCATCGAGGATGTCGAGTTGCCGCAGTACTGGTAGAGG | |
| LF | CAGCTCGGTCTTGTATAGGC | |
| LB | TGGGTCGACTGGTTCAAC | |
| NTM (16SrRNA) | F3 | CCGCGGTAATACGTAGGGT |
| B3 | ACCGGTGTTCCTCCTGAT | |
| FIP | CGCTCACAGTTAAGCCGTGAGATCCGGAATTACTGGGCGT | |
| BIP | GGCGATACGGGCAGACTAGAGTCGCATTCCACCGCTACAC | |
| LF | ACAAACCACCTACGAGCTCTT | |
| LB | ACTGCAGGGGAGACTGGA | |
| M. intracellulare (MINTM006_47990) | F3 | TCTTCCGTGGTACGAGAG |
| B3 | TGATACGGAGAAGGGATCG | |
| FIP | TGCACATCCTGCGCCAATCCATACATGGCGACCTTG | |
| BIP | GTAATCCGGCGTGGCTGTACTCCCACCAATAAGGCA | |
| LF | ATGGCGATCGCGATTAGG | |
| LB | CCATTCTGCTGGCCATCTC | |
|
M. avium
(gyrB) |
F3 | GCCTGACCATCAACCTCACC |
| B3 | TGGTGGATGGGGTTTTTGG | |
| FIP | CTTCTCCTGCGCCGACTTGGCGGGTGACCAACGAAGAG | |
| BIP | AATCGGCTGCGCCGCATAAGTTTGACGAAGTCGACCAGG | |
| LF | TGTCGCTGACCACCTCG | |
| LB | TCAAGCACCGCACCTTC | |
| M. abscessus (erm41) | F3 | TGCCAGGGTGCTAGCCGTCGA |
| B3 | TGGCGAACAGGTGCTCGCT | |
| FIP | GAAATGGCCGTCGCGGTTCGTTCACGGTTTGCCGAG | |
| BIP | TGGTGGCGAGCCCACCAGGTCGGCAGCCA | |
| LF | GCGAGCAGGTCCGCTTCCGCTAT | |
| LB | ACCAAGTCACCAGCGCA | |
| M. kansasii(hypothetical protein B1T47_13295) | F3 | CCCGGTCCACTATTACGACA |
| B3 | CAGTGTCAGTGCAAGATCGA | |
| FIP | GGAACCGTTGATCGGTTGCCGTTCAGAATCGACCGCATGG | |
| BIP | CGCCAACATGGCAATCCGGACGGTCTTCCAGATCCAGCT | |
| LF | TGCGATGCAGGTTGCGG | |
| LB | GGCAGGCGGTACGTCAT | |
|
M. gordonae
(ITS) |
F3 | CCCTTAGACACTTACAAACACT |
| B3 | TAAGGAGCACCACGAAGA | |
| FIP | CCTCCATCTTGGTGGTGGGCGAACGACAACGCATACA | |
| BIP | GTGTTGCCTCAGGACCCAATTCTGTAGTGGACGAAGACC | |
| LF | AGTGGTTGCGAGCATCAA | |
| LB | GCTTTGCCTGTTGTCGTG | |
|
M. fortuitum
(dnaA) |
F3 | GATCGTGATTCCAACAGTGA |
| B3 | AGTCCTCGGATTCCTCTG | |
| FIP | GAGAGCAGAGCAAACCCCTCCACTGACTCCTCAGCAAAG | |
| BIP | GTTCCCACCCCGTTCGTCCTGAGCGCGTTGATGATC | |
| LF | TTCACCAGCTTGAGCCAG | |
| LB | GAGATCGAACGGCACCTC |