Table 4.
GO enrichment* of the differentially expressed F. verticillioides genes after co-culturing
| GO biological processes | GO molecular function | |
|---|---|---|
| Upregulated genes | ||
| Small molecule metabolic process (75/569) (GO:0044282) | Oxidoreductase activity (165/1248) (GO:001649) | |
| Organic acid metabolic process (50/329) (GO:0006082) | Oxidoreductase activity acting on the CH-NH2 group of donors (8/25) (GO:0016638) | |
| Carboxylic acid metabolic process (48/319) (GO:0019752) | Oxidoreductase activity acting on the CH-CH group of donors (17/53) (GO:0016627) | |
| Oxoacid metabolic process (48/322) (GO:0043436) | Oxidoreductase activity acting on single donors with incorporation of molecular oxygen (4/4) (GO:0016701) | |
| Transmembrane transport (89/877) (GO:0055085) | Acyltransferase activity (28/178) (GO:0016746) | |
| ADP metabolic process (6/16) (GO:0046031) | Acyltransferase activity transferring groups other than amino-acyl gr (22/142) (GO:0016747) | |
| Monocarboxylic acid metabolic process (17/83) (GO:0032787) | Transmembrane transporter activity (84/861) (GO:0022857) | |
| Generation of precursor metabolites and energy (16/81) (GO:0006091) | Catalytic activity (366/4021) (GO:0003824) | |
| Glycolytic process (6/14) (GO:0006096) | Ion binding (173/2170) (GO:0005506) | |
| Nucleotide phosphorylation (6/14) (GO:0046939) | Acyl-CoA dehydrogenase activity (3/3) (GO:0003995) | |
| Nucleoside diphosphate phosphorylation (6/14) (GO:0006165) | Vitamin binding (18/118) (GO:0019842) | |
| ATP generation from poly-ADP-D-ribose (6/14) (GO:1990966) | Flavin adenine dinucleotide binding (30/218) (GO:0050660) | |
| Serine family amino acid metabolic process (8/30) (GO:0009069) | Carbon–carbon lyase activity (11/59) (GO:0016830) | |
| Purine nucleoside diphosphate metabolic process (6/17) (GO:0009135) | Hydrolyase activity (9/40) (GO:0016787) | |
| Purine ribonucleoside diphosphate metabolic process (6/17) (GO:0009179) | Nitronate monooxygenase activity (4/4) (GO:0018580) | |
| Organic acid catabolic process (12/60) (GO:0016054) | Monooxygenase activity (23/183) (GO:0004497) | |
| Carboxylic acid catabolic process (12/60) (GO:0046395) | ||
| Small molecule catabolic process (17/81) (GO:0044282) | ||
| Fatty acid catabolic process (4/6) (GO:0009062) | ||
| Downregulated genes | ||
| Carbohydrate metabolic process (21/388) (GO:0005975) | Catalytic activity (91/4021) (GO:0003824) | |
| Biological process (89/4847) (GO:0008150) | Hydrolase activity hydrolyzing O-glycosyl compounds (18/234) (GO:0004553) | |
| Transmembrane transport (27/877) (GO:0055085) | Hydrolase activity acting on glycosyl bonds (18/245) (GO:0016798) | |
| Transport (31/1189) (GO:0006810) | Transporter activity (29/879) (GO:0005215) | |
| Metabolic process (57/3311) (GO:0008152) | Transmembrane transporter activity (27/861) (GO:0022857) | |
| Establishment of localization (31/1199) (GO:0051234) | Xylanase activity (2/7) (GO:0097599) | |
| Phospholipid metabolic process (8/80) (GO:0006644) | Oxidoreductase activity (30/1248) (GO:0016491) | |
| Phosphorus metabolic process (17/508) (GO:0006793) | Beta-N-acetylhexosaminidase activity (2/3) (GO:0004563) | |
| Lipid metabolic process (9/173) (GO:0006629) | O-acyltransferase activity (3/12) (GO:0008374) | |
| Phosphate-containing compound metabolic process (16/498) (GO:0006796) | Hexosaminidase activity (2/3) (GO:0015929) | |
| Organophosphate metabolic process (10/224) (GO:0019637) | Phospholipase activity (3/14) (GO:0004620) | |
| Phospholipid biosynthetic process (5/62) (GO:0008654) | Lipase activity (3/26) (GO:0016298) | |
| Polysaccharide catabolic process (5/67) (GO:0000272) | Endo-1,4-beta-xylanase activity (2/6) (GO:0031176) | |
(Number of genes/pathway genes); *ShinyGO 0.80