Table 7. Evaluation of the impact of MVPA-DTI modules on performance.
Method | AUROCa | AUPRb | F1-score | MCCc |
---|---|---|---|---|
w/od ProSFe | 0.963 | 0.886 | 0.839 | 0.828 |
w/o DruSFf | 0.964 | 0.891 | 0.840 | 0.827 |
w/o ProSF and DruSF | 0.957 | 0.875 | 0.813 | 0.804 |
protBert-MVPA-DTIg | 0.964 | 0.89 | 0.831 | 0.822 |
MVPA-DTIh | 0.966 | 0.901 | 0.848 | 0.839 |
AUROC: Area Under the Receiver Operating Characteristic curve.
AUPR: Area Under the Precision-Recall Curve.
MCC: Matthews Correlation Coefficient.
w/o denotes corresponding module was removed.
ProSF: protein sequence feature extraction module.
DruSF: drug compound structure feature extraction module.
protBert-MVPA-DTI replaces the ProSF module with ProtBert processing.
MVPA-DTI: multi-view path aggregation for drug-target interaction.