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. 2002 Jul 22;99(16):10405–10410. doi: 10.1073/pnas.162250899

Table 1.

Structure determination of AAV-2

Space group P1 Unit cell a = b = 249.7 Å, c = 644.8 Å; α = 90.0°, β = 101.2°, γ = 120.0°
Data processing (three-fold-expanded in pseudo-R3) Noncrystallographic averaging
 Observations 747,988  Redundancy 180-fold
 Unique reflections 495,356 Correlation coefficients
 Resolution 100–3 Å (shell at 3.5 Å)   cc(2FoF〈map〉, φ〈map〉) 0.78
 Completeness 56% (43%) (80% to 3.5 Å)   cc(Fo, F〈map〉) 0.65
Rmerge 0.156 (0.309) R(Fo, F〈map〉) 0.32
Model
 Amino acids 180 × 519 R/Rfree 0.338/0.342
 Missing 1–14 (VP3) rms deviations from ideal bond lengths/angles 0.02 Å/2.2°
*

Rmerge = hi[Ih,i − 〈Ih〉]/∑h〈Ih〉, where Ih,i is the ith observation of a symmetry equivalent of reflection h.

F〈map〉, φ〈map〉 are Fourier terms of the back-transformed final averaged map.

Correlation between the densities of all noncrystallographic symmetry equivalent points.

§

Rfree is not unbiased. Test-set reflections are correlated to working-set reflections mapped to the neighborhood with noncrystallographic symmetry. However, with the high ratio of data to parameters, over-fitting will be negligible.