Table 1.
Interaction | Ligand ⋯ Enzyme | Distance, Å
|
||
---|---|---|---|---|
ODC⋅OMP | ODC⋅I− | ODC⋅BMP† | ||
Carboxylate binding | O8 ⋯ Asp-91(Oδ2) | 3.49 ± 0.23 | 4.43 ± 0.83 | |
O8 ⋯ Asp-96(Oδ1) | 4.08 ± 0.30 | 7.86 ± 0.98 | ||
O8 ⋯ Lys-93(Nζ) | 2.70 ± 0.10 | 5.38 ± 1.33 | ||
C6 ⋯ Asp-91(Oδ2) | 5.79 ± 0.22 | 4.02 ± 0.18 | 2.82 | |
C6 ⋯ Asp-96(Oδ1) | 5.34 ± 0.27 | 3.99 ± 0.20 | 4.24 | |
C6 ⋯ Lys-93(Nζ) | 4.89 ± 0.15 | 2.82 ± 0.10 | 2.70 | |
Ribose binding | O2′ ⋯ Lys-59(Nζ) | 2.99 ± 0.44 | 4.48 ± 0.23 | 4.84 |
O3′ ⋯ Lys-59(Nζ) | 3.83 ± 0.47 | 2.87 ± 0.14 | 3.16 | |
O3′ ⋯ Ser-35(Oγ) | 2.89 ± 0.20 | 3.45 ± 0.26 | 3.58 | |
O3′ ⋯ Asp-37(Oδ2) | 6.92 ± 1.48 | 2.84 ± 0.34 | 2.86 | |
Phosphate binding | Phosphate O ⋯ Arg-235(Nη2) | 2.85 ± 0.35 | 2.74 ± 0.12 | 2.84 |
Phosphate O ⋯ Arg-235(Nη1) | 2.94 ± 0.34 | 2.90 ± 0.25 | 2.82 | |
Phosphate O ⋯ Tyr-217(OH) | 2.60 ± 0.09 | 2.62 ± 0.09 | 2.68 | |
Phosphate O ⋯ Gln-215(Nɛ2) | 4.30 ± 0.36 | 3.28 ± 0.60 | 5.19 | |
Capping loop | O2 ⋯ Gln-215(Nɛ2) | 3.23 ± 0.45 | 3.43 ± 0.39 | 4.01 |
O4 ⋯ Ser-154(N) | 2.96 ± 0.20 | 3.31 ± 0.33 | 2.78 | |
O4 ⋯ Ser-154(Oγ) | 3.41 ± 0.22 | 3.97 ± 0.24 | 3.76 | |
O4 ⋯ Cys-155(Sγ) | 3.56 ± 0.47 | 6.05 ± 0.49 | 5.88 |
ODC⋅BMP data are taken from the crystal structure of ref. 9.