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. 2002 Jul 9;99(15):9668–9673. doi: 10.1073/pnas.142307099

Table 1.

Electrostatic interaction distances between ligand and ODC

Interaction Ligand ⋯ Enzyme Distance, Å
ODC⋅OMP ODC⋅I ODC⋅BMP
Carboxylate binding O8 ⋯ Asp-91(Oδ2) 3.49  ± 0.23 4.43  ± 0.83
O8 ⋯ Asp-96(Oδ1) 4.08  ± 0.30 7.86  ± 0.98
O8 ⋯ Lys-93(Nζ) 2.70  ± 0.10 5.38  ± 1.33
C6 ⋯ Asp-91(Oδ2) 5.79  ± 0.22 4.02  ± 0.18 2.82
C6 ⋯ Asp-96(Oδ1) 5.34  ± 0.27 3.99  ± 0.20 4.24
C6 ⋯ Lys-93(Nζ) 4.89  ± 0.15 2.82  ± 0.10 2.70
Ribose binding O2′ ⋯ Lys-59(Nζ) 2.99  ± 0.44 4.48  ± 0.23 4.84
O3′ ⋯ Lys-59(Nζ) 3.83  ± 0.47 2.87  ± 0.14 3.16
O3′ ⋯ Ser-35(Oγ) 2.89  ± 0.20 3.45  ± 0.26 3.58
O3′ ⋯ Asp-37(Oδ2) 6.92  ± 1.48 2.84  ± 0.34 2.86
Phosphate binding Phosphate O ⋯ Arg-235(Nη2) 2.85  ± 0.35 2.74  ± 0.12 2.84
Phosphate O ⋯ Arg-235(Nη1) 2.94  ± 0.34 2.90  ± 0.25 2.82
Phosphate O ⋯ Tyr-217(OH) 2.60  ± 0.09 2.62  ± 0.09 2.68
Phosphate O ⋯ Gln-215(Nɛ2) 4.30  ± 0.36 3.28  ± 0.60 5.19
Capping loop O2 ⋯ Gln-215(Nɛ2) 3.23  ± 0.45 3.43  ± 0.39 4.01
O4 ⋯ Ser-154(N) 2.96  ± 0.20 3.31  ± 0.33 2.78
O4 ⋯ Ser-154(Oγ) 3.41  ± 0.22 3.97  ± 0.24 3.76
O4 ⋯ Cys-155(Sγ) 3.56  ± 0.47 6.05  ± 0.49 5.88

ODC⋅BMP data are taken from the crystal structure of ref. 9