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. 2005 Oct;187(20):6998–7008. doi: 10.1128/JB.187.20.6998-7008.2005

TABLE 2.

Operator sequence change versus SF

Parameter or change from Ori-3 Operator sequence SF
CNU Hha
Position 1 5 1015 202530
Ori-3 5′-CCC-GATC ATTAACTGTGAATGATCGGTGATCCTG - GGG -3′ 0.54 0.58
5′ 2-bp deletion TCATTAACTGTGAATGATCGGTGATCCTG 0.56 0.59
5′ 3-bp deletion CATTAACTGTGAATGATCGGTGATCCTG 0.50 0.57
5′ 4-bp deletion ATTAACTGTGAATGATCGGTGATCCTG 0.50 0.51
5′ 5-bp deletion TTAACTGTGAATGATCGGTGATCCTG 0 0
5′ 10-bp deletion TGTGAATGATCGGTGATCCTG 0 0
5′ 2-bp addition AGGAT CATTAACTGTGAATGATCGGTGATCCTG 0.52 0.54
3′ 2-bp deletiona GAT CATTAACTGTGAATGATCGGTGATCC 0 0
T to A at position 30 GAT CATTAACTGTGAATGATCGGTGATCCAG 0 0
T to C at position 30 GAT CATTAACTGTGAATGATCGGTGATCCCG 0 0
A to G at position 19 GAT CATTAACTGTGAATGGTCGGTGATCCTG 0.49 0.57
3′ 10-bp deletionb GAT CATTAACTGTGAATGATC 0 0
cnb ATTAACTGTGAATGATCGGTGATCCT
a

This deletion results in the same DNA sequence as a change from T to G at position 30 due to the GGG sequence of the vector at the 3′ end of Ori-3.

b

Sequence contains only the inverted repeat.