TABLE 1.
GPR | Result for:
|
|||||
---|---|---|---|---|---|---|
P41
|
P46
|
|||||
SASP assayb | Folded by CDc | MALLS (T:D:M)d | Autoprocessinge | Folded by CD | MALLS (T:D:M) | |
Wild type | Active | Folded | 60:0:0 | Active | Folded | 90:0:0 |
Inactive single variants | ||||||
D127A | Inactive | Folded | 80:0:0 | Inactive | Folded | 100:0:0 |
D127E | Inactive | Folded | 80:0:0 | Inactive | Folded | 100:0:0 |
D127N | Inactive | Folded | 0:40:0 | Inactive | Folded | 90:0:0 |
D127S | Inactive | Folded | 0:20:0 | Inactive | Folded | 90:0:0 |
D193N | Inactive | Folded | 80:0:0 | Inactive | Folded | 90:0:0 |
Active single variants | ||||||
Group Ag | Active | NDf | ND | Active | Folded | ND |
Group Bh | Active | Folded | ND | Active | Folded | ND |
S199A | Active | Folded | 10:30:10 | Inactive | Folded | 80:0:0 |
R202Q | Active | Folded | ND | Active | Folded | 90:0:0 |
D246N | Partially active | Folded | Aggregatedi | Inactive | Folded | Aggregated |
S249A | Partially active | Folded | Aggregated | Inactive | Folded | Aggregated |
Deletion variants | ||||||
Δ223 | Active | Folded | ND | Active | Folded | ND |
Δ213-226 | Inactive | Misfolded | Aggregated | Inactive/inactive | Misfolded | Aggregated |
Δ213-227 | Inactive | Misfolded | Aggregated | Inactive/inactive | Misfolded | Aggregated |
Δ214-226 | Inactive | Misfolded | ND | Inactive/inactive | Misfolded | ND |
Δ214-227 | Inactive | Misfolded | ND | Inactive/inactive | Misfolded | ND |
Assays of activity, autoprocessing, CD spectroscopy, and MALLS on wild-type P41 and P46 and all variants were done as described in Materials and Methods.
Active, no significant difference (± 20%) in activity relative to that of wild-type P41. Inactive, at least 80-fold less active than wild-type P41. Partially active, ≈50% activity relative to that of wild-type P41.
Folded, no significant difference between a variant's CD spectrum and that of the corresponding wild-type GPR (P41 or P46) (see Fig. 3). Misfolded, significant difference between a variant's CD spectrum and that of wild-type GPR.
Data are reported as ratios of the percent tetramer (T) to dimer (D) to monomer (M). These values may not add up to 100% because most proteins did not completely give well-defined populations of homogeneous particle size. (See Fig. 4.)
Active, generation of P41 after overnight incubation under autoprocessing conditions. Inactive, no P41 generated. Wild-type P46 typically autoprocesses to 50% completion overnight, and the sensitivity of this assay allows detection of ≈3% autoprocessing. Inactive/inactive, P46 variant was unable to autoprocess to P41 and was inactive against SASP as P46.
ND, not done.
D256N, E26Q, E89Q, H215Q, K21P, Q208E, S212A, S218A, T74D, T215V, and Y72F.
D153N, D211N, D253N, E201Q, H142Q, K223A, K223E, K223H, K223M, S210A, R224Q, T125N, and T173V.
Aggregated, MALLS analysis yielded only high-molecular-weight species with no detectable tetramer, dimer, or monomer.