5. Binding Free Energy Components for Both the CHIKV nsP2 and DENV NS2B-NS3 Proteases Complexed with Tetraketone Derivatives, Computed from 500 Snapshots through MM-GBSA .
| energy
components |
|||||||
|---|---|---|---|---|---|---|---|
| protein (receptor) | tetraketone derivatives (ligand) | ΔE vdw | ΔE ele | ΔG pol | ΔG nonpol | ΔG Total | |
| CHIKV nsP2 Pro | 3c | AVG | –25.0056 | –3.9768 | 10.2266 | –2.6412 | –21.3971 |
| SD | 4.3016 | 4.8415 | 4.5578 | 0.4706 | 3.7083 | ||
| 3f | AVG | –30.0431 | –2.9538 | 11.705 | –2.9296 | –24.2215 | |
| SD | 3.4509 | 1.9362 | 2.1816 | 0.2957 | 2.9797 | ||
| DENV NS2B-NS3 Pro | 3c | AVG | –37.0733 | –9.6038 | 22.0866 | –4.1575 | –28.748 |
| SD | 2.9428 | 4.9863 | 5.3151 | 0.2583 | 2.6377 | ||
| 3f | AVG | –36.0363 | –1.781 | 12.6947 | –4.2725 | –29.3951 | |
| SD | 4.3016 | 4.8415 | 4.5578 | 0.4706 | 3.7083 | ||
All energy component values are given in kcal/mol. Components: E vdw, van der Waals energy; E ele, electrostatic energy in the gas phase; Gnon-pol, nonpolar solvation energy; ΔGpol, polar solvation energy. .