Table 2. Genome assembly data for Chionomys nivalis.
| Genome assembly | ||
|---|---|---|
| Assembly name | mChiNiv1.1 | |
| Assembly accession | GCA_950005125.1 | |
| Alternate haplotype accession | GCA_950005115.1 | |
| Assembly level for primary assembly | chromosome | |
| Span (Mb) | 2,393.39 | |
| Number of contigs | 357 | |
| Number of scaffolds | 160 | |
| Longest scaffold (Mb) | 205.9 | |
| Assembly metric | Measure | Benchmark |
| Contig N50 length | 30.96 Mb | ≥ 1 Mb |
| Scaffold N50 length | 88.84 Mb | = chromosome N50 |
| Consensus quality (QV) | Primary: 60.4; alternate: 60.4;
combined: 60.4 |
≥ 40 |
| k-mer completeness | Primary: 91.06%; alternate: 78.64%;
combined: 99.40% |
≥ 95% |
| BUSCO * | C:96.2%[S:93.3%,D:2.9%],
F:0.6%,M:3.2%,n:13,798 |
S > 90%; D < 5% |
| Percentage of assembly mapped to
chromosomes |
98.05% | ≥ 90% |
| Sex chromosomes | X and Y |
localised homologous
pairs |
| Organelles | Mitochondrial genome: 16.29 kb | complete single alleles |
* BUSCO scores based on the glires_odb10 BUSCO set using version 5.3.2. C = complete [S = single copy, D = duplicated], F = fragmented, M = missing, n = number of orthologues in comparison.