Table 2.
Location, lengths, and directions of annotated genes within the mitochondrial and nuclear rRNA gene clusters of Austropeplea subaquatilis, with comparisons to Austropeplea cf. brazieri (values after slash). Nucleotide pairwise identity of each gene between the two species is shown.
| Gene designations | Location start | Location end | Length (bp) | Direction | Pairwise Identity | p-distance |
|---|---|---|---|---|---|---|
| Mitochondrial genes | ||||||
| 16S | 1/1 | 986/986 | 986/986 | forward | 99.4% | 0.6% |
| tRNA-L1(tag) | 988/988 | 1051/1051 | 64/64 | forward | N/A | N/A |
| tRNA-P(tgg) | 1047/1047 | 1106/1106 | 60/60 | forward | N/A | N/A |
| tRNA-A(tgc) | 1107/1107 | 1170/1170 | 64/64 | forward | N/A | N/A |
| nad6 | 1171/1171 | 1629/1629 | 459/459 | forward | 97.6% | 2.4% |
| nad5 | 1631/1631 | 3277/3277 | 1647/1647 | forward | 96.9% | 3.1% |
| nad1 | 3279/3279 | 4154/4154 | 876/876 | forward | 98.3% | 1.7% |
| nad4L | 4155/4155 | 4452/4452 | 298/298 | forward | 98.3% | 1.7% |
| cytb | 4453/4453 | 5533/5533 | 1081/1081 | forward | 98.3% | 1.7% |
| tRNA-D(gtc) | 5536/5536 | 5588/5587 | 53/52 | forward | N/A | N/A |
| tRNA-F(gaa) | 5589/5588 | 5651/5650 | 63/63 | forward | N/A | N/A |
| cox2 | 5652/5651 | 6294/6293 | 643/643 | forward | 98.3% | 1.7% |
| tRNA-Y(gta) | 6297/6296 | 6346/6345 | 50/50 | forward | N/A | N/A |
| tRNA-W(tca) | 6347/6346 | 6405/6405 | 59/60 | forward | N/A | N/A |
| tRNA-C(gca) | 6410/6410 | 6468/6468 | 59/59 | forward | N/A | N/A |
| tRNA-G(tcc) | 6471/6470 | 6524/6522 | 54/53 | forward | N/A | N/A |
| tRNA-H(gtg) | 6527/6525 | 6583/6582 | 57/58 | forward | N/A | N/A |
| tRNA-Q(ttg) | 6592/6591 | 6650/6649 | 59/59 | reverse | N/A | N/A |
| tRNA-L2(taa) | 6651/6650 | 6703/6701 | 53/52 | reverse | N/A | N/A |
| atp8 | 6705/6703 | 6855/6853 | 151/151 | reverse | 98.2% | 1.8% |
| tRNA-N(gtt) | 6857/6854 | 6920/6917 | 64/64 | reverse | N/A | N/A |
| atp6 | 6921/6918 | 7560/7557 | 640/640 | reverse | 98.6% | 1.4% |
| tRNA-R(tcg) | 7561/7558 | 7623/7620 | 63/63 | reverse | N/A | N/A |
| tRNA-E(gaa) | 7624/7621 | 7675/7672 | 52/52 | reverse | N/A | N/A |
| 12S | 7676/7673 | 8393/8388 | 718/716 | reverse | 98.2% | 1.8% |
| tRNA-M(cat) | 8394/8389 | 8466/8457 | 73/69 | reverse | N/A | N/A |
| nad3 | 8467/8458 | 8806/8797 | 340/340 | reverse | 99.1% | 0.9% |
| tRNA-S2(tga) | 8817/8808 | 8871/8862 | 55/55 | reverse | N/A | N/A |
| tRNA-S1(gct) | 8872/8863 | 8926/8917 | 55/55 | reverse | N/A | N/A |
| nad4 | 8927/8918 | 10252/10243 | 1326/1326 | forward | 98% | 2% |
| tRNA-T(tgt) | 10253/10244 | 10319/10311 | 67/68 | reverse | N/A | N/A |
| cox3 | 10321/10313 | 11100/11092 | 780/780 | reverse | 98.8% | 1.2% |
| tRNA-I(gat) | 11141/11133 | 11205/11197 | 65/65 | forward | N/A | N/A |
| nad2 | 11206/11198 | 12109/12101 | 904/904 | forward | 97.8% | 2.2% |
| tRNA-K(ttt) | 12110/12102 | 12191/12180 | 82/79 | forward | N/A | N/A |
| cox1 | 12203/12192 | 13694/13683 | 1492/1492 | forward | 97.7% | 2.3% |
| tRNA-V(tac) | 13695/13684 | 13755/13744 | 61/61 | forward | N/A | N/A |
| Nuclear rRNA gene cluster | ||||||
| 18S | 1/1 | 1865/1865 | 1865/1865 | forward | 100% | 0% |
| ITS1 | 1866/1866 | 2374/2369 | 509/504 | forward | 86.2% | 13.8% |
| 5.8S | 2375/2370 | 2532/2527 | 158/158 | forward | 100% | 0% |
| ITS2 | 2533/2528 | 2900/2915 | 368/388 | forward | 91.8% | 8.2% |
| 28S | 2901/2916 | 6731/6747 | 3831/3832 | forward | 99.3% | 0.7% |