Table 2.

The STScores of fifteen GP methods across six datasets

Dataset	Trait	LSTM	DNN	RNN	ResNet34	ResNet18	BayesA	LightGBM	BayesB	BayesC	RR-BLUP	BL	RF	GBLUP	XGBoost	SVM
rice439	GL	0.993	0.985	0.983	0.961	0.954	1.000	0.994	0.995	0.983	0.983	0.979	0.991	0.982	0.987	0.963
rice439	GR	0.999	1.000	1.000	0.928	0.945	0.996	0.994	0.996	0.997	1.000	0.995	0.975	0.995	0.983	0.972
rice439	GW	0.995	0.983	0.989	0.885	0.867	0.993	0.979	1.000	0.994	0.994	0.989	0.973	0.986	0.973	0.958
rice439	PH	0.996	1.000	0.989	0.937	0.929	0.956	0.973	0.957	0.966	0.966	0.964	0.963	0.959	0.97	0.637
maize1404	CW	0.983	0.998	1.000	0.869	0.893	0.959	0.866	0.958	0.962	0.960	0.958	0.862	0.932	0.833	0.798
maize1404	DTA	0.786	0.768	0.538	0.908	0.904	0.993	0.937	1.000	0.993	0.987	0.989	0.915	0.928	0.896	0.855
maize1404	DTS	0.801	0.786	0.759	0.912	0.950	1.000	0.940	1.000	0.999	0.999	0.993	0.930	0.930	0.908	0.905
maize1404	DTT	0.815	0.814	0.829	0.937	0.936	0.999	0.938	1.000	0.997	0.993	0.995	0.930	0.925	0.919	0.853
maize1404	EH	0.990	0.964	1.000	0.918	0.913	0.993	0.939	0.991	0.991	0.991	0.975	0.904	0.933	0.893	0.706
maize1404	ELL	0.954	0.951	0.898	0.921	0.948	0.999	0.912	0.997	0.997	1.000	0.995	0.897	0.959	0.905	0.838
maize1404	ELW	0.911	0.921	0.934	0.876	0.883	1.000	0.957	0.999	0.975	0.955	0.965	0.957	0.914	0.931	0.929
maize1404	PH	0.957	0.960	0.962	0.971	0.965	1.000	0.917	0.998	0.999	0.998	0.992	0.908	0.956	0.907	0.777
wheat599	yield1	0.987	0.998	0.998	0.975	1.000	0.812	0.844	0.803	0.81	0.817	0.808	0.917	0.845	0.942	0.927
wheat599	yield2	0.995	1.000	0.977	0.944	0.963	0.898	0.845	0.899	0.9	0.896	0.898	0.873	0.902	0.845	0.905
wheat599	yield3	1.000	0.976	0.977	0.999	0.955	0.803	0.82	0.799	0.803	0.801	0.803	0.907	0.847	0.824	0.901
wheat599	yield4	1.000	0.953	0.997	0.966	0.955	0.795	0.836	0.781	0.792	0.798	0.787	0.873	0.78	0.806	0.898
tomato398	1-nitro-2-phenylethane	1.000	0.878	0.813	0.875	0.704	0.598	0.903	0.592	0.600	0.605	0.599	0.600	0.558	0.575	0.539
tomato398	fructose	1.000	0.955	0.945	0.837	0.895	0.761	0.735	0.761	0.764	0.763	0.766	0.756	0.766	0.727	0.681
tomato398	glucose	0.988	1.000	0.964	0.866	0.938	0.750	0.707	0.751	0.753	0.757	0.758	0.699	0.756	0.643	0.676
tomato398	isovaleraldehyde	1.000	0.924	0.949	0.978	0.975	0.811	0.873	0.805	0.810	0.804	0.816	0.860	0.820	0.874	0.742
tomato398	phenylacetaldehyde	1.000	0.984	0.953	0.783	0.652	0.755	0.915	0.759	0.758	0.759	0.762	0.847	0.763	0.843	0.632
tomato398	soluble-solids	0.977	1.000	0.976	0.812	0.818	0.772	0.792	0.767	0.767	0.767	0.764	0.766	0.769	0.757	0.710
soybean20087	FT	0.978	0.979	0.977	0.958	0.964	0.990	1.000	0.990	0.990	0.989	0.988	0.975	0.986	0.997	-
soybean20087	PH	0.998	0.989	1.000	0.975	0.979	0.991	0.994	0.991	0.987	0.980	0.987	0.982	0.966	0.992	-
soybean20087	SOC	0.993	0.994	0.994	0.985	0.986	1.000	0.997	1.000	0.999	0.999	1.000	0.993	0.996	0.998	-
soybean20087	SPC	0.988	0.990	0.985	0.964	0.966	0.997	0.977	0.997	0.995	0.993	0.997	0.977	1.000	0.990	-
soybean20087	SW	0.999	1.000	1.000	0.988	0.991	0.997	0.989	0.997	0.997	0.997	0.997	0.967	0.995	0.986	-
soybean20087	YIELD	0.998	0.994	1.000	0.984	0.983	0.988	1.000	0.987	0.988	0.987	0.988	0.987	0.997	0.996	-
cotton1037	LPA	0.968	0.951	0.967	0.846	0.903	0.997	0.994	0.997	0.933	0.902	0.917	1	0.896	0.953	0.700