Table 3.
Predicted HLA binders within the OmpA sequence harboring identical peptides with the human proteome. HLA class I binders predicted by NetMHCpan 4.1 and HLA class II binders predicted by NetMHCIIpan 4.0. SB: strong binder; and WB: weak binder
| 8-meric peptide | Found binder peptide in OmpA | HLA allele | Strength of binder | Length |
|---|---|---|---|---|
| TKNYDSKI | ITKNYDSKIKPY | HLA-A*01:01 | WB | 12 meric |
| LSLARANS | RLSLARANSVK | HLA-A*03:01 | WB | 11 meric |
| LSLARANS | LSLARANSVK | HLA-A*03:01 | WB | 10 meric |
| LSLARANS | KLNERLSLARANSVK | HLA-DPA1*02:01/DPB1*09:01 | WB | 15 meric |
| LSLARANS | LNERLSLARANSVKS | HLA-DPA1*02:01/DPB1*09:01 | WB | 15 meric |
| LSLARANS | NERLSLARANSVKSA | HLA-DPA1*02:01/DPB1*09:01 | WB | 15 meric |
| LSLARANS | LNERLSLARANSVKS | HLA-DPA1*02:01/DPB1*10:01 | WB | 15 meric |
| LSLARANS | NERLSLARANSVKSA | HLA-DPA1*02:01/DPB1*10:01 | WB | 15 meric |
| LSLARANS | KLNERLSLARANSVK | HLA-DPA1*02:01/DPB1*10:01 | WB | 15 meric |
| LSLARANS | RKLNERLSLARANSV | HLA-DPA1*02:01/DPB1*10:01 | WB | 15 meric |
| LSLARANS | KLNERLSLARANSVK | HLA-DPA1*02:01/DPB1*14:01 | WB | 15 meric |
| LSLARANS | LNERLSLARANSVKS | HLA-DPA1*02:01/DPB1*14:01 | WB | 15 meric |
| LSLARANS | NERLSLARANSVKSA | HLA-DPA1*02:01/DPB1*14:01 | WB | 15 meric |
| LSLARANS | RKLNERLSLARANSV | HLA-DPA1*02:01/DPB1*17:01 | WB | 15 meric |
| LSLARANS | KLNERLSLARANSVK | HLA-DPA1*02:01/DPB1*17:01 | WB | 15 meric |
| LSLARANS | LNERLSLARANSVKS | HLA-DPA1*02:01/DPB1*17:01 | WB | 15 meric |
| LSLARANS | NERLSLARANSVKSA | HLA-DPA1*02:01/DPB1*17:01 | WB | 15 meric |
| LSLARANS | RKLNERLSLARANSV | HLA-DRB1*07:01 | WB | 15 meric |
| LSLARANS | KLNERLSLARANSVK | HLA-DRB1*07:01 | SB | 15 meric |
| LSLARANS | LNERLSLARANSVKS | HLA-DRB1*07:01 | SB | 15 meric |
| LSLARANS | NERLSLARANSVKSA | HLA-DRB1*07:01 | SB | 15 meric |
| LSLARANS | ERLSLARANSVKSAL | HLA-DRB1*07:01 | WB | 15 meric |