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. 2025 Oct 27;26:372. doi: 10.1186/s13059-025-03839-5

Table 5.

Characteristics of simulated ancient metagenomic datasets representing three distinct environments: bone, dental calculus, and gut

Sample # Taxa Coverage # Reads (merged) Total length GC content (%)
Bone 34 13,481,538 689,950,613 57.62
Bone 34 22,469,438 1,149,702,991 57.62
Bone 34 10× 44,938,811 2,299,239,612 57.62
Dental Calculus 59 8,169,233 417,738,204 43.77
Dental Calculus 59 13,615,501 696,358,011 43.76
Dental Calculus 59 10× 27,231,047 1,392,706,548 43.77
Gut 116 25,583,926 1,308,958,512 42.45
Gut 116 42,640,124 2,181,743,052 42.45
Gut 116 10× 85,279,973 4,363,114,755 42.45

The table summarizes the number of taxa, average coverage depth, number of sequences, total sequence length, and GC content (%) for representative datasets simulated with short fragments and moderate damage