Table II.
Nonredundant number of proteins identified in each experimental set to be present in different subcellular locations and the confirmation of locations by independent techniques
FP, Fluorescent protein-derived set; MS, mass spectrometry proteomics-derived set; SP, Swiss-Prot database-derived set; Any One, nonredundant set of proteins with at least one piece of data across all three experimental data types. Two-way (MS-FP, MS-SP, FP-SP) and three-way (MS-FP-SP) cross-over sets where data are present for individual proteins from multiple experimental sets are also shown.
| Compartment | MS | FP | SP | Any One | MS-FP | MS-SP | FP-SP | All Three |
|---|---|---|---|---|---|---|---|---|
| Mitochondria | 547 | 73 | 227 | 726 | 16 | 99 | 11 | 5 |
| Plastid | 1,017 | 118 | 323 | 1,240 | 23 | 173 | 30 | 8 |
| Nucleus | 367 | 320 | 551 | 1,100 | 75 | 18 | 50 | 5 |
| PM | 534 | 84 | 117 | 670 | 19 | 44 | 7 | 5 |
| Vacuole | 378 | 43 | 42 | 424 | 16 | 17 | 13 | 7 |
| Peroxisome | 28 | 47 | 11 | 77 | 1 | 6 | 2 | 0 |
| Golgi | 27 | 41 | 10 | |||||
| ER | 39 | 43 | 3 | |||||
| Cytosol | 154 | 248 | 12 | |||||
| Extracellular | 18 | 214 | 4 | |||||
| Cytoskeleton | 24 | 2 | 0 | |||||
| Cell plate | 10 | 6 | 0 | |||||
| Unclear | 101 | 238 |