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. 2005 Oct;139(2):869–884. doi: 10.1104/pp.105.066134

Table II.

EST characteristics and cluster information

Library
ESTs (No.)
Average Trimmed Length
3′ ESTs Included in TUs (No.)a
TUs (No.)b
Singletons (No.)c
Full Coding Length
Inverted Clones
3′ 5′ 3′ 5′
nt % %
DG1 5,642 6,627 501 528 5,149 2,858 1,938 56 3.2
DSAF1 3,057 3,497 516d 516d 2,960 1,995 1,401 14 2.3
DSBF1 2,961 785 543d 543d 2,882 1,904 1,399 18 2.0
EM1 5,126 5,405 508 521 4,793 2,690 1,779 52 1.6
FM1 4,976 5,336 507 504 4,861 2,716 1,850 50 1.2
IP1 4,936 5,067 500 538 4,731 2,582 1,700 49 0.5
LG1 5,015 5,316 485 543 4,822 2,966 2,210 52 2.6
OV1 2,578 2,810 516 546 2,458 1,575 1,152 53 2.9
OV2 2,615 2,787 571 504 2,476 1,647 1,245 52 2.3
PI1 5,077 5,203 523 527 4,774 2,539 1,711 53 1.4
PIC1 5,042 4,522 551 592 4,823 2,646 1,699 28 0.7
RHIZ1 1,179 0 426 n.a.e 1,087 789 598 n.d.f n.d.f
RHIZ2 5,308 5,978 510 513 5,175 2,610 1,665 64 1.2
WS1 5,437 5,400 537 515 4,792 2,580 1,856 50 3.5
Total 58,949 58,733 516 529 55,783 16,801 7,769g
a

Some 3′ ESTs were excluded from the Milestone 3′ EST assembly as explained in “Materials and Methods.”

b

The total number of TUs represented within the indicated library; because a single TU can have ESTs from many libraries, the sum of the values in this column exceed 16,801.

c

The number of TUs in which an EST from this library appears only once.

d

Average is for both 3′ and 5′ sequences together.

e

Not applicable.

f

Not determined.

g

Total number of singletons in the Milestone assembly.