| PPI | Prepulse Inhibition |
| QTL | Quantitative Trait Locus |
| BXD RI | B6 × D2 Recombinant Inbred Strain |
| B6 | C57/BL6 |
| D2 | DBA2/J |
| PheWAS | Phenome-Wide Association Study |
| GN | GeneNetwork |
| LRS | Likelihood Ratio Statistic |
| Atad1 | ATPase family, AAA domain containing 1, also known as thorase |
| PFC | Prefrontal Cortex |
| HIPP | Hippocampus |
| STR | Striatum |
| NAc | Nucleus Accumbens |
| MDB | Midbrain |
| VTA | Ventral Tegmental Area |
| AMYG | Amygdala |
| HYPO | Hypothalamus |
| GRIA2 | Glutamate Ionotropic Receptor AMPA type 2 subunit |
| ASNA1 | Arsenical Pump-Driving ATPase 1 |
| GWAS | Genome-Wide Association Study |
| Disc1 | Disrupted in Schizophrenia 1 |
| Nrg1 | Neuregulin 1 |
| Chr | Chromosome |
| SNP | Single-Nucleotide Polymorphism |
| GEMMA | Genome-Wide Efficient Mixed-Model Analysis |
| LOD | Logarithm Odds |
| MGI | Mouse Genome Informatics |
| RGD | Rat Genome Database |
| IMPC | International Mouse Phenotyping Consortium |
| KEGG | Kyoto Encyclopedia of Genes and Genomes |
| mRNA | Messenger RNA |
| RMA | Robust Multi-Array Average |
| STRING | Search Tool for the Retrieval of Interacting Genes/Proteins |
| GEO | Gene Expression Omnibus |
| Prkg1 | Protein Kinase cGMP-dependent type 1 |
| Rnls | Renalase, FAD Dependent Amine Oxidase |
| Asah2 | N-acylsphingosine amidohydrolase 2 |
| Papss2 | 3′-phosphoadenosine 5′ phosphosulfate synthase 2 |
| Ifit1 | Interferon-induced protein with tetratricopeptide repeats 1 |
| Cdc37l1 | Cell Division cycle 37 homolog-like 1 |
| Ak3 | Adenylate Kinase 3 |
| Ranbp6 | RAN binding protein 6 |
| Ifit1bl2 | Interferon-induced protein with tetratricopeptide repeats 1B like 2 |
| MPO | Mammalian Phenotype Ontology |
| GO-BP | Gene Ontology Biological Processes |
| HPO | Human Phenotype Ontology |
| FDR | False Discovery Rate |
| ND | Node Degree |
| EED | Embryonic Ectoderm Development |
| TIA1 | Cytotoxic Granule-Associated RNA binding protein 1 |
| RGS14 | Regulator of G protein Signaling 14 |
| DLG4 | Discs Large Homolog 4 |
| ZBTB7B | Zinc finger and BTB domain containing 7B |
| GRIA2 | Glutamate Ionotropic Receptor AMPA type subunit 2 |
| bp | Base pair |
| UTR | Untranslated Region |
| PCA | Principal Component Analysis |
| Fabp7 | Fatty acid binding protein 7 |
| Ptpn5 | Tyrosine-Protein-Phosphatase Non-receptor Type 5 |
| APBB1lP | Amyloid Beta Precursor Protein Binding Family B Member 1 Interacting Protein |
| AMPAR | AMPA receptor |
| LTD | Long-Term Depression |
| cKO | Conditional Knockout |
| GRIP1 | AMPAR/Glutamate Interacting-Protein 1 |