| AAD | Antibiotic-associated diarrhea |
| ACE2 | Angiotensin-converting enzyme 2 |
| AMPs | Antimicrobial peptides |
| APCs | Antigen-presenting cells |
| CD | Crohn’s disease |
| CFS | Chalder Fatigue Scale |
| CFU | Colony forming unit |
| CNS | Central nervous system |
| FAO | Food and Agriculture Organization |
| GI | Gastrointestinal |
| GPR | G protein-coupled receptors |
| HAM-D | Hamilton Rating Scale for Depression |
| HDAC | Histone deacetylases |
| HIV | Human immunodeficiency virus |
| HPA | Hypothalamic–pituitary–adrenal |
| HSV | Human simplex virus |
| IBD | Inflammatory Bowel Disease |
| IBS | Irritable bowel syndrome |
| IFN | Interferon |
| IgA | Immunoglobulin class A |
| IL | Interleukin |
| IRF | Interferon regulatory factor |
| LAB | Lactic acid bacteria |
| LPS | Lipopolysaccharides |
| MV | Measles virus |
| NF-κB | Nuclear factor kappa B |
| NK | Natural killer |
| NLRs | NOD-like receptors |
| PACS | Post-acute COVID-19 syndrome |
| PCS | Post-COVID-19 syndrome |
| PGF | Placental growth factor |
| POTS | Postural orthostatic tachycardia syndrome |
| PRRs | Pattern recognition receptors |
| PV | Poliomyelitis virus |
| RBD | Receptor binding protein |
| S | Spike |
| s.l. | Sensu lato |
| SARS-CoV-2 | Severe Acute Respiratory Syndrome Coronavirus 2 |
| SCAFs | Short-chain fatty acids |
| SIP | sphingosine-1-phosphate |
| TJ | Tight junction |
| TLRs | Toll-like receptors |
| UC | Ulcerative colitis |
| VOCs | Variants of concern |
| VSV | Vesicular stomatitis virus |
| VUM | Variant under monitoring |
| WHO | World Health Organization |
| ZO | Zonula occludens |