Table 3.
Meta-analysis results for vulva traits based on imputed data exceeding the genome-wide significance threshold
| Trait | Chr1 | Genomic region (Mb) | N 2 | Top SNP | Position3 | P value4 | Genes |
|---|---|---|---|---|---|---|---|
| VL5 | 4 | 36.42 to 41.24 | 1,541 | rs318761015 | 40429140 | 9.88E-10 | CPQ, MTERF3, ENSSSCG00000049545, SDC2, GDF6, UQCRB, PTDSS1 |
| VW6 | 1 | 9.02 to 9.12 | 167 | rs787781987 | 9091205 | 5.02E-08 | SYNJ2 |
| 12.69 to 14.20 | 704 | rs692657017 | 14089663 | 6.91E-11 | MYCT1, VIP, FBXO5, ESR1, ENSSSCG00000049158, ENSSSCG00000004082 | ||
| 4 | 36.39 to 44.80 | 1,703 | rs339518670 | 38760955 | 3.18E-11 | MATN2, POP1, RIDA | |
| 6 | 87.52 to 88.37 | 83 | rs706725347 | 87639411 | 2.03E-07 | PUM1, SNRNP40, TINAGL1, SPOCD1, SERINC2, COL16A1, FABP3, PEF1, ADGRB2, ZCCHC17,HCRTR1 | |
| VAS7 | 2 | 43.47 to 44.92 | 150 | rs329773566 | 44036766 | 1.67E-08 | PSMA1, INSC, CYP2R1,COPB1,PDE3B |
| 5 | 101.34 to 103.41 | 2,313 | rs318823998 | 103201251 | 2.13E-12 | NAV3 |
1 Sus scrofa chromosome, the same as below.
2The number of significant SNPs.
3Position of top SNP.
4 P value according to the Wald test.
5Vulva length.
6Vulva width.
7Vulva angle scores.