Table I. Crystallographic data.
Fragment name | 1A | Z2B | Cys2 |
---|---|---|---|
Vimentin residues included | 102–138 | 385–412 | 328–411 |
No. of residues per chaina |
39 |
59 |
84 |
Diffraction data |
|
|
|
Space group | P6222 | P3121 | I222 |
Cell constants a × b × c (Å) | 56.8 × 56.8 × 58.4 | 98.8 × 98.8 × 36.5 | 76.6 × 84.3 × 240.8 |
Resolution limitsb,c (Å) | 50.0–1.4 (1.45–1.40) | 35.0–1.9 (1.97–1.90) | 35.0–2.3 (2.33–2.30) |
No. of independent reflections | 11 440 (1122) | 15 422 (1604) | 34 937 (1159) |
Redundancy | 10.3 (5.5) | 4.0 (3.7) | 4.5 (4.0) |
Completeness (%) | 99.7 (99.6) | 99.2 (99.4) | 99.5 (99.7) |
<I/σ> | 17.0 (1.9) | 14.6 (3.3) | 13.5 (1.8) |
Rsymd |
0.037 (0.560) |
0.063 (0.372) |
0.058 (0.405) |
Refined model |
|
|
|
Protein chains/asymmetric unit | 1 | 2 | 6 |
Ordered vimentin residues in each chain | A: 102–138 | A: 385–409 | A: 328–406 |
B: 385–406 | B: 328–406 | ||
C: 337–406 | |||
D: 330–407 | |||
E: 337–406 | |||
F: 333–406 | |||
No. of solvent molecules | 35 | 194 | 455 |
Total no. of non-H atoms | 375 | 1066 | 4170 |
Average model B-factor | 23.5 | 31.5 | 53.8 |
Rworke | 0.197 | 0.199 | 0.242 |
Rfreee,f | 0.216 (461) | 0.227 (778) | 0.262 (1095) |
R.m.s.d. bondsg (Å) | 0.020 | 0.017 | 0.008 |
R.m.s.d. anglesg (°) | 2.0 | 1.7 | 1.1 |
aBesides the authentic vimentin residues, the 1A fragment contains two extra residues, GlySer, at the N-terminus (see Strelkov et al., 2001). The Z2B chimera includes the GCN4 leucine zipper.
bData in parentheses are for the highest resolution shell.
cCys2 crystals exhibited anisotropic diffraction, which extended up to 1.9 Å resolution in the c* direction and to 2.3 Å resolution in the a* and b* directions.
eR = ∑|Fobs – Fcalc|/∑Fobs.
fIn parentheses is the number of randomly selected reflections that were excluded from refinement and used to calculate the ‘free’ R-factor (Brünger and Nilges, 1993).
gR.m.s.ds from the Engh and Huber standard parameters.