ABSTRACT
Adult resident stem cells are capable of regenerating tissues that manifest signs of “rejuvenation” in flatworms and mice of older ages. These findings suggest potentially conserved regulatory mechanisms of adult resident stem cells from worms to mammals. Regenerative capacities are more limited in specific tissues and stem cell types of larger mammals. Understanding and harnessing the rejuvenating properties of resident adult stem cells in flatworms and mice could have broad therapeutic implications for improving stem cell function and tissue plasticity across organ systems of humans in advanced age.
Resident stem cells from aged planaria and murine skeletal muscle possess some inherent abilities to mitigate signs of aging after tissue regeneration.

1. Regenerative Capacities of Resident Adult Stem Cells in Older Age
Aging is associated with numerous hallmarks that relate to structural and functional cell and tissue decline, and eventual mortality (López‐Otín et al. 2013, 2023). Stem cell exhaustion is one such hallmark that leads to diminished repair capacity after injury in regenerative tissues such as skeletal muscle (Brunet et al. 2023; Sousa‐Victor et al. 2022). Observations of a decline in adult (somatic) stem cell number and regenerative efficiency with aging has led to speculation on how replenishing stem cell pools may promote tissue “rejuvenation” through turnover of aged cells (Oh et al. 2014)—specifically in response to stress. We define rejuvenation as the reversal of age‐associated phenotypes or processes at the tissue or cellular level to that resembling a youthful state, or a significant alteration to molecular profiles that can result in youthful biological function and lower biological age. The transplantation of young stem cells combined with pharmacologic or biologic priming of the implantation niche is one such rejuvenation strategy. Unfortunately, this approach may not be scalable to all tissues and patients due to many barriers in the process: the generation of sufficient numbers of cells for transplantation, the promotion of stem cell survival and engraftment, potential immunological responses, and the viability of long‐term engraftment (Oh et al. 2014). Although adult mammalian stem cell attrition is commonly observed as a consequence of primary aging and/or secondary to declining activity levels, the remaining resident stem cells can still perform tissue adaptive functions after injury (Collins et al. 2007; Karlsen et al. 2020; Shavlakadze et al. 2010). Some adult stem cells may even be refractory to aging (Novak et al. 2021), and resident stem cells can still contribute to adaptation in geriatric animals (Thomas et al. 2025). Adult stem cell function is nevertheless hampered by the age‐associated inflammatory environment and dysregulation of immune cells (Blanc et al. 2025; Hoang et al. 2025; Shavlakadze et al. 2010). Reversion to a youthful inflammatory milieu in aged animals, by heterochronic parabiosis in rodents for example, can improve regenerative potential (Conboy et al. 2005); these findings point to some degree of inherent rejuvenating capacity within aged stem cells. The molecular revitalization of aged stem cells in rodents after heterochronic parabiosis is conserved across various tissue and stem cell types (Ma et al. 2022; Zhang et al. 2023). A provocative question therefore arises: do adult resident stem cells from aged organisms possess the capacity to regenerate a tissue that subsequently features signs of rejuvenation?
2. The Rejuvenating Potential of Planarian Stem Cells at Older Ages
Planarians are considered “immortal” due to their extremely long lifespan and remarkable regenerative capacity (Austad 2009; Petralia et al. 2014; Sahu et al. 2017). Dai et al. recently used Schmidtea mediterranea ( S. mediterranea ) flatworms to study the effects of regeneration on aging (Dai et al. 2025). They found strains that proliferate via sexual reproduction manifest signs of aging at the molecular, cellular, and physiological levels. After phenotyping S. mediterranea to characterize signs of aging, Dai and coworkers reported that amputation of the heads in aged organisms and regeneration of new heads reversed aging of the eyes. This striking observation suggested that resident stem cells possess the rejuvenating capacity to reverse a common age‐associated dysfunction. Other physiological signs of aging such as reproductive infertility, impaired mobility, and increased free radicals and oxidative stress were also reversed by regeneration in older organisms. In the head, regeneration in older planarians restored a subset of neuronal and muscle cells that were lost during aging. At the molecular level, a planarian aging gene expression signature was reversed after regeneration. Tissue‐specific effects included changes to genes implicated in proteostasis (lysosome, protein folding), transcription and translation, oxidative stress, chromatin remodeling, and mitochondrial regulation. Disruptions to these processes are hallmarks of aging (López‐Otín et al. 2013, 2023). The regenerative ability of planarians was attributed to a pluripotent stem cell population that was enriched for the genes encoding Piwi (Reddien et al. 2005) and Tert (Dai et al. 2025). Collectively, these findings provide thought‐provoking evidence that resident adult stem cells can rejuvenate aged tissue to a more youthful state, especially in the newly regenerated heads of sexual planarians (Figure 1).
FIGURE 1.

Summary figure illustrating the main findings related to signs of rejuvenation after regeneration in planarians (Dai et al. 2025) and mouse skeletal muscle (Chambers et al. 2025).
3. Epigenetic Rejuvenation With Injury Recovery in Aged Mammalian Skeletal Muscle
Skeletal muscle is an accessible solid tissue in humans that demonstrates overt signs of aging—reduced mass and strength/power producing capacity—which negatively impact mobility, independence, and mortality.
Certain muscles can be studied at the cellular and molecular levels in humans with relative ease via needle biopsy. Acessibility to skeletal muscle makes it an attractive tissue for exploring the effects of aging. Skeletal muscle is unique in that the primary cell type by volume, the muscle fiber, is multinucleated and muscle fiber nuclei (myonuclei) are nondividing organelles. It is also unique in that skeletal muscle is regenerative in mammals due to a relatively rare but highly replicative and typically (in nonpathological scenarios) unipotent resident stem cell population: Pax7+ satellite cells (Brack and Rando 2012). These cells decline in number with aging, which does not exacerbate age‐related sarcopenia, but are indispensable for muscle fiber regeneration across the lifespan (Fry et al. 2015; Keefe et al. 2015). Satellite cells typically reside in a quiescent (dormant) state until activated by an external simulus such as injury. They serve to reconstitute damaged muscle fibers, add to the myonuclear and mitochondrial pools during growth, and serve various paracrine functions (Goh et al. 2025; Murach, Dungan, et al. 2021; Murach, Fry, et al. 2021; Murach et al. 2018). Some evidence suggests that satellite cells can fuse to muscle fibers to replace damaged or dysfunctional myonuclei under basal homeostatic conditions (Keefe et al. 2015; Pawlikowski et al. 2015). However, aging and other conditions have been associated with myonuclear loss in some skeletal muscles throughout the lifespan (Bruusgaard et al. 2006; Keefe et al. 2015; Kirby and Dupont‐Versteegden 2022; Serrano et al. 2025), and prolonged satellite cell depletion does not cause or accentuate myonuclear loss by late life (Fry et al. 2015; Keefe et al. 2015; Englund et al. 2020). The prevalence of basal myonuclear turnover and its impact on muscle aging is therefore still unclear. Epigenetic dysregulation is a hallmark of aging (López‐Otín et al. 2013, 2023), and aging can be assessed via changes to DNA methylation age (DNAmAGE) which is widely used as a proxy for biological age across species (Horvath 2013; Horvath and Raj 2018; Lu et al. 2023). Changes to DNAmAGE can also be quantified in response to various exposures and interventions. Chambers et al. recently asked whether resident satellite cell‐dependent muscle regeneration could alter predicted DNAmAGE in aged murine muscle tissue (Chambers et al. 2025). It is perhaps intuitive that regeneration of aged murine skeletal muscle would not affect DNAmAGE of the tissue since the satellite cells (as well as supporting cell types) responsible for regeneration are the same chronological age as the organism. In other words, aged satellite cells should reconstruct an aged muscle fiber in all aspects. Surprisingly, 35 days after chemical injury in aged mice (24 months old), DNAmAGE of muscle tissue (i.e., all cell types combined) was precipitously decreased (Figure 1). This age reduction—up to 68% depending on the DNAmAGE clock used—is among the largest reported in the literature apart from epigenetic reprogramming by Yamanaka factors. Comparing old to young mice (4 months old) after regeneration, the magnitude of differential gene expression relative to uninjured was comparable and featured appreciable overlap; however, DNA methylation status and gene expression changes after injury were more tightly coupled in young muscle. This latter finding deserves further consideration since DNAmAGE was not lower after regeneration in young animals, and may have been accelerated depending on the clock used. Some epigenomic‐transcriptomic alterations linked to stem cell performance—upregulation of Axin2, Egr1, Fzd4, Meg3, and Spry1—were also unique to young muscle following injury recovery (Chambers et al. 2025).
4. Practical Implications of Resident Stem Cells Regenerating a “Younger” Muscle in Aged Mice
Some evidence suggests that repeated injuries enhance somatic stem cell performance (Falick Michaeli et al. 2022; Morroni et al. 2023), which provides information on adaptive cellular resiliency to stress. Alternatively, injury then recovery may cause impaired muscle tissue plasticity in response to a subsequent stressor in young skeletal muscle (Bigard et al. 2001; Kawano et al. 2017) along with aberrant extracellular matrix accumulation (Sato et al. 2003). A “rejuvenated” molecular signature after regeneration in aged muscle tissue (all cell types combined) points to a differential pace of aging depending on cell type—specifically the stem cells—within a tissue (Buckley et al. 2023; Gorelov et al. 2024). Initial attempts at quantifying the epigenetic profile of normally quiescent muscle stem cells indeed suggest that they do undergo methylation aging, but remain appreciably younger than most other tissues and cell types in animals (Hernando‐Herraez et al. 2019; Trapp et al. 2021) as well as the overall muscle tissue (Gorelov et al. 2024). Emerging evidence also suggests that forced proliferation of mammalian stem cells advances DNAmAGE (Gorelov et al. 2024). Myonuclei are nondividing organelles that have modest capacity for DNA synthesis (Borowik et al. 2022, 2024) but typically comprise the majority of all nuclei in muscle (Bagley et al. 2023; von Walden et al. 2020); and yet, skeletal muscle tissue still undergoes epigenetic aging on the aggregate (Chambers et al. 2025; Gorelov et al. 2024; Jones III et al. 2023; Murach et al. 2022). Perhaps epigenetic aging is more closely related to how transcriptionally active a nucleus is (i.e., its transcriptional “history”) versus whether or not it has undergone division. DNAmAGE reduction in muscle as the result of exercise training (Jones III et al. 2023; Murach et al. 2022) may in part depend on the contributions of typically unipotent satellite cells. These cells can elicit unique epigenetic effects in muscle after hypertrophic mechanical overload or lifelong wheel running (Murach, Dungan, et al. 2021; Murach et al. 2025).
5. The Rejuvenating Potential of Resident Stem Cells Across Species
In contrast to mammals, the resident stem cells of mature planarians (i.e., neoblasts) are pluripotent and can give rise to all body tissues (Dai et al. 2025; Fincher et al. 2018; Plass et al. 2018; Zeng et al. 2018). The numbers and transcriptional states of these stem cells manifest minimal changes in 3 year old planarians compared to young planarians (Dai et al. 2025). These findings contrast what occurs in murine muscle stem cells throughout their ~2 year lifespan (Kimmel et al. 2020; Lazure et al. 2023; Walter et al. 2024), as well as what is observed in aged human satellite cells (Kedlian et al. 2024; Lai et al. 2024). Unlike mammalian muscle stem cells, the planarian stem cell compartment can thus be largely maintained at youthful states as aging progresses, and for longer than the typical lifespan of a mouse. Recent work suggests that manipulating retinoic acid production can confer regenerative abilities to murine ear pinna (Lin et al. 2025). The importance of retinoic acid synthesis for stem cell performance is supported by evidence from regenerating zebrafish fins (Wehner et al. 2014) and aged murine myogenic cells (Fraczek et al. 2025). The possible benefits of retinoic acid signaling in highly regenerative axolotls has been recognized for some time (Maden 1982; Duerr et al. 2025; Khan et al. 2025). Whether retinoic acid treatment can elicit a rejuvenation effect is unclear. In young adult axolotls, it was recently observed that regeneration led to reduced DNAmAGE of newly formed limbs (Haluza et al. 2024). Epigenetic rejuvenation from tail regeneration remains unclear. It is important to note that limb fibroblastic cells are differentiated, and regeneration engages a major dedifferentiation process in which these cells acquire embryonic transcriptional states (Gerber et al. 2018). Interestingly, muscle cells are regenerated by Pax7+ stem cells in both limb (Sandoval‐Guzman et al. 2014; Fei et al. 2017) and tail (Wang et al. 2025). Additionally, Pax7+ stem cells in the tail are multipotent and can give rise to nonmuscle lineages (Wang et al. 2025). Whether rejuvenation can specifically occur in muscle tissues of both limb and tail after regeneration remains an open question in the axolotl (Haluza et al. 2024), especially in old adults. As tail regeneration does not engage the observed dedifferentiation process from the limb (Gerber et al. 2018) and is mainly driven by Pax7+ muscle stem cells and Meox1+ asomitic stem cells (Masselink et al. 2024), a closer examination of tail tissues for signs of rejuvenation will be intriguing. Based on these collective cross‐species examples, a deeper knowledge of how planarian stem cells maintain their “molecular youth” and superior regenerative potential over an extremely long relative lifespan, and understanding whether adult stem cells in aged axolotls confer rejuvenation effects, hold promise for guiding therapies and interventions that may further improve the performance of mammalian adult stem cells and adaptation in older age.
6. A Path Forward for Tissue Rejuvenation by Resident Stem Cells
The work discussed above raises several important considerations for future investigations: do molecular or cellular “rejuvenating” effects after regeneration vary according to tissue type, cell type, biological sex, or chronological age? Do single and repeated bouts of injuries induce the same extent of rejuvenation after regeneration? Does the magnitude of rejuvenation or aging mitigation differ after different time periods following regeneration (e.g., early versus late recovery)? To understand the differential effects of regeneration on DNAmAGE in younger and older mice is interesting. It is also worth considering the consequences of what molecular and cellular information may be lost as a result of resident stem cell‐mediated tissue rejuvenation (e.g., adaptive epigenetic memory, acquired cell resiliencies, and/or trained immunity), or potentially what could be gained (e.g., mutations specifically from within stem cells). With the capacity to induce regeneration in otherwise nonregenerative tissues in mammals (Lin et al. 2025), the notion of regeneration‐driven rejuvenation (Dai et al. 2025; Chambers et al. 2025) shifts from mere discoveries in model animals to a probable therapeutic approach in the future. We are not suggesting that injury should be used as a strategy to promote youthfulness. We instead posit that molecular pathways and cellular activities underlying regeneration‐induced rejuvenation can be used as a guide to enhance tissue health throughout the lifespan or in older populations, perhaps as an adjuvant to exercise or other therapies. Furthermore, since Pax7+ cells contribute to axolotl muscle regeneration (Sandoval‐Guzman et al. 2014; Fei et al. 2017), a more granular understanding of how these and other conserved stem cell populations compare to mammalian stem cells throughout the lifespan could unlock new triggers for healing or tissue youthfulness in humans (Dwaraka and Voss 2021). Hence, understanding the mechanisms of regeneration‐induced rejuvenation in model systems will be of paramount importance toward the goal of combatting human aging. Future work should aim to deeply phenotype whole tissues and organisms after regeneration in older ages across highly regenerative species such as spiny mice, axolotls, fish and reptiles. Determining whether regeneration‐induced mitigation of molecular and cellular aging profiles is followed by improved tissue plasticity and stress resilience is particularly important for translational and therapeutic applications. Collectively, recent work suggests that the plasticity of adult resident stem cells can be robust and that these cells possess some inherent capacity for facilitating youthful qualities of adult tissues at older ages.
Author Contributions
This work was drafted by K.A.M. and revised by L.G. and K.A.M. The final version of the manuscript was edited and approved by all authors.
Conflicts of Interest
The Regents of the University of California are the sole owners of patents and patent applications directed at epigenetic biomarkers for which Steve Horvath is a named inventor; S.H. is a founder and paid consultant of the nonprofit Epigenetic Clock Development Foundation that licenses these patents. S.H. is a Principal Investigator at Altos Labs, Cambridge Institute of Science, a biomedical company that works on rejuvenation.
Acknowledgments
This work was supported by National Institutes of Health R00 AG063944, R01 AG080047, and K02 AG088465 to K.A.M., and R01 AG080047‐02S1 to K.A.M./T.L.C., and by Pew Charitable Trusts and National Institutes of Health DP2 AG093207 and R21 AG084959 to L.G. V.N.G. was supported by NIH and Hevolution grants. This work was performed while K.A.M. and L.G. were Glenn Foundation/American Federation for Aging Research Junior Investigator Awardees. We thank Dr. Prayag Murawala for insightful comments on the manuscript. The figure was generated using BioRender.
Funding: This work was supported by National Institutes of Health R00 AG063944, R01 AG080047, and K02 AG088465 to K.A.M., and R01 AG080047‐02S1 to K.A.M./T.L.C., and by Pew Charitable Trusts and National Institutes of Health DP2 AG093207 and R21 AG084959 to L.G. V.N.G. was supported by NIH and Hevolution grants. This work was performed while K.A.M. and L.G. were Glenn Foundation/American Federation for Aging Research Junior Investigator Awardees.
Contributor Information
Kevin A. Murach, Email: kmurach@uark.edu.
Longhua Guo, Email: longhuag@umich.edu.
Data Availability Statement
Data sharing not applicable to this article as no datasets were generated or analyzed during the current study.
References
- Austad, S. N. 2009. “Is There a Role for New Invertebrate Models for Aging Research?” Journals of Gerontology Series A: Biological Sciences and Medical Sciences 64, no. 2: 192–194. 10.1093/gerona/gln059. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Bagley, J. R. , Denes L. T., McCarthy J. J., Wang E. T., and Murach K. A.. 2023. “The Myonuclear Domain in Adult Skeletal Muscle Fibres: Past, Present and Future.” Journal of Physiology 601, no. 4: 723–741. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Bigard, A. X. , Zoll J., Ribera F., et al. 2001. “Influence of Overload on Phenotypic Remodeling in Regenerated Skeletal Muscle.” American Journal of Physiology‐Cell Physiology 281, no. 5: C1686–C1694. [DOI] [PubMed] [Google Scholar]
- Blanc, R. S. , Shah N., Hachmer S., et al. 2025. “Epigenetic Erosion of H4K20me1 Induced by Inflammation Drives Aged Stem Cell Ferroptosis.” Nature Aging 5: 1491–1509. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Borowik, A. K. , Davidyan A., Peelor F. F., et al. 2022. “Skeletal Muscle Nuclei in Mice Are Not Post‐Mitotic.” Function 4: zqac059. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Borowik, A. K. , Murach K. A., and Miller B. F.. 2024. “The Expanding Roles of Myonuclei in Adult Skeletal Muscle Health and Function.” Biochemical Society Transactions 52, no. 6: 2603–2616. [DOI] [PubMed] [Google Scholar]
- Brack, A. S. , and Rando T. A.. 2012. “Tissue‐Specific Stem Cells: Lessons From the Skeletal Muscle Satellite Cell.” Cell Stem Cell 10, no. 5: 504–514. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Brunet, A. , Goodell M. A., and Rando T. A.. 2023. “Ageing and Rejuvenation of Tissue Stem Cells and Their Niches.” Nature Reviews Molecular Cell Biology 24, no. 1: 45–62. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Bruusgaard, J. , Liestøl K., and Gundersen K.. 2006. “Distribution of Myonuclei and Microtubules in Live Muscle Fibers of Young, Middle‐Aged, and Old Mice.” Journal of Applied Physiology 100, no. 6: 2024–2030. [DOI] [PubMed] [Google Scholar]
- Buckley, M. T. , Sun E. D., George B. M., et al. 2023. “Cell‐Type‐Specific Aging Clocks to Quantify Aging and Rejuvenation in Neurogenic Regions of the Brain.” Nature Aging 3, no. 1: 121–137. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Chambers, T. L. , Wells J., Koopmans P. J., et al. 2025. “At the Nexus Between Epigenetics and Senescence: The Effects of Senolytic (BI01) Administration on DNA Methylation Clock Age and the Methylome in Aged and Regenerated Skeletal Muscle.” Aging Cell 24: e70068. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Collins, C. A. , Zammit P. S., Ruiz A. P., Morgan J. E., and Partridge T. A.. 2007. “A Population of Myogenic Stem Cells That Survives Skeletal Muscle Aging.” Stem Cells 25, no. 4: 885–894. [DOI] [PubMed] [Google Scholar]
- Conboy, I. M. , Conboy M. J., Wagers A. J., Girma E. R., Weissman I. L., and Rando T. A.. 2005. “Rejuvenation of Aged Progenitor Cells by Exposure to a Young Systemic Environment.” Nature 433, no. 7027: 760–764. [DOI] [PubMed] [Google Scholar]
- Dai, X. , Li X., Tyshkovskiy A., et al. 2025. “Regeneration Leads to Global Tissue Rejuvenation in Aging Sexual Planarians.” Nature Aging 5: 780–798. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Duerr, T. J. , Miller M., Kumar S., et al. 2025. “Retinoic Acid Breakdown Is Required for Proximodistal Positional Identity During Axolotl Limb Regeneration.” Nature Communications 16, no. 1: 4798. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Dwaraka, V. B. , and Voss S. R.. 2021. “Towards Comparative Analyses of Salamander Limb Regeneration.” Journal of Experimental Zoology Part B: Molecular and Developmental Evolution 336, no. 2: 129–144. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Englund, D. A. , Murach K. A., Dungan C. M., et al. 2020. “Depletion of Resident Muscle Stem Cells Negatively Impacts Running Volume, Physical Function, and Muscle Fiber Hypertrophy in Response to Lifelong Physical Activity.” American Journal of Physiology‐Cell Physiology 318, no. 6: C1178–C1188. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Falick Michaeli, T. , Sabag O., Fok R., et al. 2022. “Muscle Injury Causes Long‐Term Changes in Stem‐Cell DNA Methylation.” Proceedings of the National Academy of Sciences of the United States of America 119, no. 52: e2212306119. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Fei, J.‐F. , Schuez M., Knapp D., Taniguchi Y., Drechsel D. N., and Tanaka E. M.. 2017. “Efficient Gene Knockin in Axolotl and Its Use to Test the Role of Satellite Cells in Limb Regeneration.” Proceedings of the National Academy of Sciences 114, no. 47: 12501–12506. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Fincher, C. T. , Wurtzel O., de Hoog T., Kravarik K. M., and Reddien P. W.. 2018. “Cell Type Transcriptome Atlas for the Planarian Schmidtea mediterranea .” Science 360, no. 6391: eaaq1736. 10.1126/science.aaq1736. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Fraczek, P. M. , Duran P., Yang B. A., et al. 2025. “Vitamin A Retinoic Acid Contributes to Muscle Stem Cell and Mitochondrial Function Loss in Old Age.” JCI Insight 10, no. 9: e183706. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Fry, C. S. , Lee J. D., Mula J., et al. 2015. “Inducible Depletion of Satellite Cells in Adult, Sedentary Mice Impairs Muscle Regenerative Capacity Without Affecting Sarcopenia.” Nature Medicine 21, no. 1: 76–80. 10.1038/nm.3710. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gerber, T. , Murawala P., Knapp D., et al. 2018. “Single‐Cell Analysis Uncovers Convergence of Cell Identities During Axolotl Limb Regeneration.” Science 362, no. 6413: eaaq0681. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Goh, J. , Williams J. G., Ogle S. E., et al. 2025. “Skeletal Muscle Stem Cell Mitochondria Are Transferred to Muscle Fibers in Response to a Hypertrophic Stimulus.” Function 6: zqaf031. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gorelov, R. , Weiner A., Huebner A., et al. 2024. “Dissecting the Impact of Differentiation Stage, Replicative History, and Cell Type Composition on Epigenetic Clocks.” Stem Cell Reports 19: 1242–1254. 10.1016/j.stemcr.2024.07.009. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Haluza, Y. , Zoller J. A., Lu A. T., et al. 2024. “Axolotl Epigenetic Clocks Offer Insights Into the Nature of Negligible Senescence.” Preprint, bioRxiv, September 10. 10.1101/2024.09.09.611397. [DOI]
- Hernando‐Herraez, I. , Evano B., Stubbs T., et al. 2019. “Ageing Affects DNA Methylation Drift and Transcriptional Cell‐To‐Cell Variability in Mouse Muscle Stem Cells.” Nature Communications 10, no. 1: 4361. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hoang, D.‐H. , Bouvière J., Galvis J., et al. 2025. “Immune Aging Impairs Muscle Regeneration via Macrophage‐Derived Anti‐Oxidant Selenoprotein P.” EMBO Reports 26: 1–27. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Horvath, S. 2013. “DNA Methylation Age of Human Tissues and Cell Types.” Genome Biology 14, no. 10: 1–20. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Horvath, S. , and Raj K.. 2018. “DNA Methylation‐Based Biomarkers and the Epigenetic Clock Theory of Ageing.” Nature Reviews Genetics 19, no. 6: 371–384. [DOI] [PubMed] [Google Scholar]
- Jones, R. G., III , Dimet‐Wiley A., Haghani A., et al. 2023. “A Molecular Signature Defining Exercise Adaptation With Ageing and In Vivo Partial Reprogramming in Skeletal Muscle.” Journal of Physiology 601, no. 4: 763–782. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Karlsen, A. , Soendenbroe C., Malmgaard‐Clausen N. M., et al. 2020. “Preserved Capacity for Satellite Cell Proliferation, Regeneration, and Hypertrophy in the Skeletal Muscle of Healthy Elderly Men.” FASEB Journal 34, no. 5: 6418–6436. [DOI] [PubMed] [Google Scholar]
- Kawano, F. , Ono Y., Fujita R., et al. 2017. “Prenatal Myonuclei Play a Crucial Role in Skeletal Muscle Hypertrophy in Rodents.” American Journal of Physiology‐Cell Physiology 312, no. 3: C233–C243. 10.1152/ajpcell.00151.2016. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kedlian, V. R. , Wang Y., Liu T., et al. 2024. “Human Skeletal Muscle Aging Atlas.” Nature Aging 4, no. 5: 727–744. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Keefe, A. C. , Lawson J. A., Flygare S. D., et al. 2015. “Muscle Stem Cells Contribute to Myofibres in Sedentary Adult Mice.” Nature Communications 6: 7087. 10.1038/ncomms8087. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Khan, S. , Ahmad K., Liu X., and Liang Y.. 2025. “Unlocking the Potential of Retinoic Acid: A Comprehensive Review of Its Regulatory Role in Epimorphic Regeneration in Axolotl Limbs for Regenerative Medicine.” In Regenerative Engineering and Translational Medicine, 1–22. Springer. [Google Scholar]
- Kimmel, J. C. , Hwang A. B., Scaramozza A., Marshall W. F., and Brack A. S.. 2020. “Aging Induces Aberrant State Transition Kinetics in Murine Muscle Stem Cells.” Development (Cambridge, England) 147, no. 9: dev183855. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kirby, T. J. , and Dupont‐Versteegden E. E.. 2022. “Cross Talk Proposal: Myonuclei Are Lost With Ageing and Atrophy.” Journal of Physiology 600, no. 9: 2077–2080. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lai, Y. , Ramírez‐Pardo I., Isern J., et al. 2024. “Multimodal Cell Atlas of the Ageing Human Skeletal Muscle.” Nature 629, no. 8010: 154–164. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lazure, F. , Farouni R., Sahinyan K., et al. 2023. “Transcriptional Reprogramming of Skeletal Muscle Stem Cells by the Niche Environment.” Nature Communications 14, no. 1: 535. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lin, W. , Jia X., Shi X., et al. 2025. “Reactivation of Mammalian Regeneration by Turning on an Evolutionarily Disabled Genetic Switch.” Science 388, no. 6754: eadp0176. [DOI] [PubMed] [Google Scholar]
- López‐Otín, C. , Blasco M. A., Partridge L., Serrano M., and Kroemer G.. 2013. “The Hallmarks of Aging.” Cell 153, no. 6: 1194–1217. [DOI] [PMC free article] [PubMed] [Google Scholar]
- López‐Otín, C. , Blasco M. A., Partridge L., Serrano M., and Kroemer G.. 2023. “Hallmarks of Aging: An Expanding Universe.” Cell 186, no. 2: 243–278. [DOI] [PubMed] [Google Scholar]
- Lu, A. T. , Fei Z., Haghani A., et al. 2023. “Universal DNA Methylation Age Across Mammalian Tissues.” Nature Aging 3, no. 9: 1144–1166. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ma, S. , Wang S., Ye Y., et al. 2022. “Heterochronic Parabiosis Induces Stem Cell Revitalization and Systemic Rejuvenation Across Aged Tissues.” Cell Stem Cell 29, no. 6: 990–1005.e1010. [DOI] [PubMed] [Google Scholar]
- Maden, M. 1982. “Vitamin A and Pattern Formation in the Regenerating Limb.” Nature 295, no. 5851: 672–675. [DOI] [PubMed] [Google Scholar]
- Masselink, W. , Gerber T., Falcon F., et al. 2024. “Somite‐Independent Regeneration of the Axolotl Primary Body Axis.” Preprint, bioRxiv, February 2. 10.1101/2024.01.31.577464. [DOI]
- Morroni, J. , Benedetti A., Esposito L., et al. 2023. “Injury‐Experienced Satellite Cells Retain Long‐Term Enhanced Regenerative Capacity.” Stem Cell Research & Therapy 14, no. 1: 246. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Murach, K. A. , Dimet‐Wiley A. L., Wen Y., et al. 2022. “Late‐Life Exercise Mitigates Skeletal Muscle Epigenetic Aging.” Aging Cell 21: e13527. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Murach, K. A. , Dungan C. M., von Walden F., and Wen Y.. 2021. “Epigenetic Evidence for Distinct Contributions of Resident and Acquired Myonuclei During Long‐Term Exercise Adaptation Using Timed In Vivo Myonuclear Labeling.” American Journal of Physiology‐Cell Physiology 32, no. 1: C86–C93. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Murach, K. A. , Englund D. A., Chambers T. L., et al. 2025. “A Satellite Cell‐Dependent Epigenetic Fingerprint in Skeletal Muscle Identity Genes After Lifelong Physical Activity.” FASEB Journal 39, no. 5: e70435. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Murach, K. A. , Fry C. S., Dupont‐Versteegden E. E., McCarthy J. J., and Peterson C. A.. 2021. “Fusion and Beyond: Satellite Cell Contributions to Loading‐Induced Skeletal Muscle Adaptation.” FASEB Journal 35, no. 10: e21893. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Murach, K. A. , Fry C. S., Kirby T. J., et al. 2018. “Starring or Supporting Role? Satellite Cells and Skeletal Muscle Fiber Size Regulation.” Physiology 33, no. 1: 26–38. 10.1152/physiol.00019.2017. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Novak, J. S. , Mázala D. A., Nearing M., et al. 2021. “Human Muscle Stem Cells Are Refractory to Aging.” Aging Cell 20, no. 7: e13411. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Oh, J. , Lee Y. D., and Wagers A. J.. 2014. “Stem Cell Aging: Mechanisms, Regulators and Therapeutic Opportunities.” Nature Medicine 20, no. 8: 870–880. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Pawlikowski, B. , Pulliam C., Betta N. D., Kardon G., and Olwin B. B.. 2015. “Pervasive Satellite Cell Contribution to Uninjured Adult Muscle Fibers.” Skeletal Muscle 5: 42. 10.1186/s13395-015-0067-1. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Petralia, R. S. , Mattson M. P., and Yao P. J.. 2014. “Aging and Longevity in the Simplest Animals and the Quest for Immortality.” Ageing Research Reviews 16: 66–82. 10.1016/j.arr.2014.05.003. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Plass, M. , Solana J., Wolf F. A., et al. 2018. “Cell Type Atlas and Lineage Tree of a Whole Complex Animal by Single‐Cell Transcriptomics.” Science 360, no. 6391: eaaq1723. 10.1126/science.aaq1723. [DOI] [PubMed] [Google Scholar]
- Reddien, P. W. , Oviedo N. J., Jennings J. R., Jenkin J. C., and Sanchez Alvarado A.. 2005. “SMEDWI‐2 Is a PIWI‐Like Protein That Regulates Planarian Stem Cells.” Science 310, no. 5752: 1327–1330. 10.1126/science.1116110. [DOI] [PubMed] [Google Scholar]
- Sahu, S. , Dattani A., and Aboobaker A. A.. 2017. “Secrets From Immortal Worms: What Can We Learn About Biological Ageing From the Planarian Model System?” Seminars in Cell and Developmental Biology 70: 108–121. 10.1016/j.semcdb.2017.08.028. [DOI] [PubMed] [Google Scholar]
- Sandoval‐Guzman, T. , Wang H., Khattak S., et al. 2014. “Fundamental Differences in Dedifferentiation and Stem Cell Recruitment During Skeletal Muscle Regeneration in Two Salamander Species.” Cell Stem Cell 14, no. 2: 174–187. [DOI] [PubMed] [Google Scholar]
- Sato, K. , Li Y., Foster W., et al. 2003. “Improvement of Muscle Healing Through Enhancement of Muscle Regeneration and Prevention of Fibrosis.” Muscle & Nerve 28, no. 3: 365–372. [DOI] [PubMed] [Google Scholar]
- Serrano, N. , Dupont‐Versteegden E. E., and Murach K. A.. 2025. “Muscle Memory Theory: A Critical Evaluation.” Journal of Physiology 603: 4705–4711. 10.1113/JP289597. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Shavlakadze, T. , McGeachie J., and Grounds M. D.. 2010. “Delayed but Excellent Myogenic Stem Cell Response of Regenerating Geriatric Skeletal Muscles in Mice.” Biogerontology 11: 363–376. [DOI] [PubMed] [Google Scholar]
- Sousa‐Victor, P. , García‐Prat L., and Muñoz‐Cánoves P.. 2022. “Control of Satellite Cell Function in Muscle Regeneration and Its Disruption in Ageing.” Nature Reviews Molecular Cell Biology 23, no. 3: 204–226. [DOI] [PubMed] [Google Scholar]
- Thomas, N. T. , Brightwell C. R., Owen A. M., et al. 2025. “Satellite Cells Choreograph an Immune Cell‐Fibrogenic Cell Circuit During Mechanical Loading in Geriatric Skeletal Muscle.” PNAS Nexus 4: pgaf236. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Trapp, A. , Kerepesi C., and Gladyshev V. N.. 2021. “Profiling Epigenetic Age in Single Cells.” Nature Aging 1: 1189–1201. [DOI] [PMC free article] [PubMed] [Google Scholar]
- von Walden, F. , Rea M., Mobley C. B., et al. 2020. “The Myonuclear DNA Methylome in Response to an Acute Hypertrophic Stimulus.” Epigenetics 15: 1151–1162. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Walter, L. D. , Orton J. L., Ntekas I., et al. 2024. “Transcriptomic Analysis of Skeletal Muscle Regeneration Across Mouse Lifespan Identifies Altered Stem Cell States.” Nature Aging 4, no. 12: 1862–1881. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wang, L. , Song L., Yi C., et al. 2025. “Divergent Stem Cell Mechanisms Governing the Primary Body Axis and Appendage Regeneration in the Axolotl.” Preprint, bioRxiv, February 11. 10.1101/2025.02.11.637618. [DOI]
- Wehner, D. , Cizelsky W., Vasudevaro M. D., et al. 2014. “Wnt/β‐Catenin Signaling Defines Organizing Centers That Orchestrate Growth and Differentiation of the Regenerating Zebrafish Caudal Fin.” Cell Reports 6, no. 3: 467–481. [DOI] [PubMed] [Google Scholar]
- Zeng, A. , Li H., Guo L., et al. 2018. “Prospectively Isolated Tetraspanin(+) Neoblasts Are Adult Pluripotent Stem Cells Underlying Planaria Regeneration.” Cell 173, no. 7: 1593–1608.e1520. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Zhang, B. , Lee D. E., Trapp A., et al. 2023. “Multi‐Omic Rejuvenation and Lifespan Extension on Exposure to Youthful Circulation.” Nature Aging 3, no. 8: 948–964. [DOI] [PMC free article] [PubMed] [Google Scholar]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Data Availability Statement
Data sharing not applicable to this article as no datasets were generated or analyzed during the current study.
