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Comparison of a BLASTX alignment with corresponding full length FASTY alignment, as generated by the Genlight system. Blue boxes in (a) indicate open reading frames, green boxes start and red boxes stop codons, respectively. The assembled TC sequence has a frameshift at position 1150 from frame 1 to 3, generating two distinct HSPs in the BLASTX alignment (b). FASTY clearly corrects this frameshift and generates a full length alignment (c).
