Table 6.
Xenopus Long Open Reading Frames (>= 600 nt) without homology to major model organism protein sequences. ORF sequences were compared to all available EST data using TBLASTN. The 46 sequences shown here have homologies to ESTs from other organisms (E < 0.01). For each TC, the number of ESTs in the TC and the accession, SignalP and TMHMM results, and description and E-value of the best hit is shown. Additionally (not shown here), both signal peptides and transmembrane domains could be predicted in: clSignal peptides only in: cl4857_sin8, cl11312_sin2, cl11866_ctg2, cl14117_ctg1, cl16548_ctg1, cl19372_ctg2; Transmembrane domains only in: cl3994_ctg1, vimsin144578, cl18799_ctg1, cl18978_ctg1, cl18978_ctg2, cl25690_ctg1, cl23256_ctg1.
| Contig/ORF | #ESTs | Accession | SignalP | TM | Description (best hit) | E-value |
| cl9703_ctg1_1 | 53 | CN060851 | Ambystoma tigrinum tigrinum | 5.00E-112 | ||
| cl15798_ctg1_1 | 4 | CN061938 | Ambystoma tigrinum tigrinum | 6.00E-53 | ||
| cl9914_ctg1_1 | 11 | BX864357 | Oncorhynchus mykiss | 4.00E-45 | ||
| vmsin143901_1 | 1 | CK600275 | Rattus norvegicus | 4.00E-43 | ||
| cl10823_ctg1_1 | 3 | CA471690 | Danio rerio | 5.00E-39 | ||
| cl2563_ctg2_1 | 10 | AV913994 | Hordeum vulgare subsp. Vulgare | 9.00E-35 | ||
| cl1723_ctg1_1 | 12 | BU129000 | Gallus gallus | 2.00E-34 | ||
| vmsin213651_1 | 1 | CD218114 | Gallus gallus | 7.00E-30 | ||
| cl15560_ctg1_1 | 3 | CK871392 | Danio rerio | 2.00E-24 | ||
| cl10197_ctg1_1 | 3 | CA975598 | Danio rerio | 2.00E-22 | ||
| cl11603_ctg1_1 | 4 | AJ456928 | Gallus gallus | 7.00E-22 | ||
| cl2506_ctg1_1 | 7 | BJ494402 | Oryzias latipes | 3.00E-19 | ||
| vmsin144578_1 | 1 | BU241764 | Gallus gallus | 1.00E-17 | ||
| cl24411_ctg1_1 | 2 | BW379961 | Ciona intestinalis | 2.00E-16 | ||
| cl25096_ctg1_1 | 2 | BX269216 | Gallus gallus | 5.00E-16 | ||
| vmsin117573_1 | 1 | BU114361 | Gallus gallus | 3.00E-14 | ||
| vmsin141365_1 | 1 | BI385350 | Amphioxus Branchiostoma fl. | 3.00E-14 | ||
| vmsin275700_1 | 1 | CN024469 | Danio rerio | 4.00E-14 | ||
| cl5895_ctg1_1 | 12 | BX870166 | Oncorhynchus mykiss | 6.00E-14 | ||
| cl18998_ctg1_1 | 2 | BW156550 | Ciona intestinalis | 8.00E-13 | ||
| cl5042_ctg1_1 | 14 | CN316430 | Danio rerio | 3.00E-12 | ||
| cl9402_ctg2_1 | 2 | AJ448952 | Gallus gallus | 2.00E-11 | ||
| cl19097_ctg1_1 | 4 | CN023422 | yes | Danio rerio | 2.00E-09 | |
| cl4943_ctg1_1 | 4 | AJ450094 | Gallus gallus | 5.00E-09 | ||
| cl19576_ctg1_1 | 2 | BX862425 | Oncorhynchus mykiss | 4.00E-08 | ||
| vmsin9176_1 | 1 | CO051215 | Leucoraja erinacea | 1.00E-07 | ||
| cl5371_ctg1_1 | 9 | CD295994 | Strongylocentrotus purpuratus | 5.00E-07 | ||
| cl10375_ctg1_1 | 9 | BU133150 | yes | Gallus gallus | 7.00E-07 | |
| cl3127_ctg2_1 | 19 | CF577195 | Saccharum sp. | 2.00E-05 | ||
| vmsin5140_1 | 1 | BM265659 | Danio rerio | 6.00E-05 | ||
| cl15473_ctg1_1 | 8 | CN502421 | Danio rerio | 7.00E-05 | ||
| cl3097_ctg2_1 | 30 | CA374396 | Oncorhynchus mykiss | 8.00E-05 | ||
| cl9923_ctg1_1 | 2 | DAA01768 | Lytechinus variegatus | 1.00E-04 | ||
| cl15340_ctg1_1 | 14 | CN180033 | yes | 1 | Danio rerio | 3.00E-04 |
| cl11246_ctg1_1 | 6 | BX302229 | Oncorhynchus mykiss | 5.00E-04 | ||
| cl4857_ctg3_1 | 7 | BF718744 | Homo sapiens | 6.00E-04 | ||
| cl18267_ctg1_1 | 2 | AAS58046 | Babesia bovis | 0.001 | ||
| cl5917_ctg1_1 | 6 | CN004343 | Canis familiaris | 0.002 | ||
| cl9934_ctg1_1 | 4 | CD740019 | yes | 2 | Gallus gallus | 0.002 |
| cl3233_ctg1_3 | 12 | CN506386 | yes | 5 | Danio rerio | 0.003 |
| cl22258_ctg1_1 | 2 | BM485921 | Gallus gallus | 0.004 | ||
| cl14723_ctg1_1 | 3 | BF037758 | Homo sapiens | 0.005 | ||
| cl5206_ctg1_1 | 9 | BG166355 | Homo sapiens | 0.005 | ||
| cl5199_ctg2_1 | 8 | BM627372 | yes | 1 | Anopheles gambiae | 0.006 |
| vmsin18077_1 | 1 | BX877871 | yes | 1 | Oncorhynchus mykiss | 0.007 |
| cl5686_ctg1_1 | 2 | BG783827 | Strongylocentrotus purpuratus | 0.008 |