Table I. Contour length and protein volumes of UvrB–DNA and UvrB*–DNA complexes.
No. of molecules | Class I | Class II | |||||
---|---|---|---|---|---|---|---|
No. of molecules | Volume (kDa) | Wrap (nm) | No. of molecules | Volume (kDa) | Wrap (nm) | ||
A. UvrB–DNA complexes | |||||||
Washed with ATP | |||||||
Wrapped | 50 | 0/50 (0%) | – | – | 50/50 (100%) | 185 ± 26 | 25 |
Not wrapped | 6 | 3/6 (50%) | n.d.a | 0 | 3/6 (50%) | n.d.a | – |
Washed without ATP | |||||||
Wrapped | 0 | – | – | – | – | – | – |
Not wrapped | 115 | 45/115 (39%) | 76.4 ± 11 | 0 | 70/115 (61%) | 151 ± 28 | 0 |
Reintroduction of ATP | |||||||
Wrapped | 64 | 24/64 (37%) | 87.4 ± 10 | 26 | 40/64 (63%) | 168 ± 14 | 22 |
Not wrapped | 0 | – | – | – | – | – | – |
B. UvrB*–DNA complexes | |||||||
Washed with ATP | |||||||
Wrapped | 27 | 0/27 (0%) | – | – | 27/27 (100%) | 135 ± 18 | 23 |
Not wrapped | 56 | 50/56 (89%) | 61.7 ± 9 | 0 | 6/56 (11%) | n.d.a | 0 |
Washed without ATP | |||||||
Wrapped | 0 | – | – | – | – | – | – |
Not wrapped | 36 | 33/36 (92%) | 61.7 ± 10 | 0 | 3/36 (8%) | n.d.a | 0 |
Reintroduction of ATP | |||||||
Wrapped | 20 | 17/20 (85%) | 77.1 ± 5 | 23 | 3/20 (15%) | 161 ± 9 | 24 |
Not wrapped | 51 | 43/51 (84%) | 68.2 ± 8 | 0 | 8/51 (16%) | 143 ± 6 | 0 |
All measured molecules were first divided in two groups; one group containing wrapped complexes, the other containing unwrapped complexes. Of both these, the protein volume and the amount of DNA involved in the wrapping were determined.
aAmount of complexes too low to determine size accurately.