Table 2.

Chromosome-wise summary of the single-nucleotide polymorphism (SNP) statistics from the genotyping-by-sequencing analysis of the interspecific cross derivatives

Chr	Scaffold	Chr Length	Raw SNPs	Filtered SNPs	Average filtered SNPs per kb of genome length
1	VACCDSCAFF1	46,295,995	115,017	12,896	4
2	VACCDSCAFF2	44,818,276	112,676	11,847	4
3	VACCDSCAFF4	42,981,373	98,542	10,374	4
4	VACCDSCAFF6	42,795,824	97,289	9,665	4
5	VACCDSCAFF7	41,705,179	108,082	10,878	4
6	VACCDSCAFF11	40,122,599	98,808	11,009	4
7	VACCDSCAFF12	39,741,682	85,235	8,597	5
8	VACCDSCAFF13	39,652,356	100,130	10,742	4
9	VACCDSCAFF17	38,874,919	92,770	10,437	4
10	VACCDSCAFF20	37,996,905	89,420	9,867	4
11	VACCDSCAFF21	37,975,728	91,709	10,305	4
12	VACCDSCAFF22	37,315,645	88,374	10,199	4
Total			1,178,052	126,816