Table 3.
Candidate genes and SNP loci significantly (p < 0.001) associated with multiple chlorophyll fluorescence parameters in the interspecific cross derivatives under heat stress
| Gene name | Associated SNPs | Scaffold | Chr | Position | R2 range (%) | Chlorophyll fluorescence parameters | Arabidopsis homolog |
|---|---|---|---|---|---|---|---|
| Hypothetical protein RclHR1_00930026 | VACCDSCAFF1:18336214-SNV | 1 | 1 | 18336214 | Fv/Fo, Fv/Fm, ΦPo, PIABS | - | |
| N-glycosylase/DNA lyase OGG1 | VACCDSCAFF2:19896806-SNV | 2 | 2 | 19896806 | 3.75–4.5.75.5 | ΦPSII, ABS/RC, PIABS | AT1G21710.1 |
| VACCDSCAFF2:19896835-SNV | 2 | 2 | 19896835 | 3.84–4.43.84.43 | ΦPSII, ABS/RC, PIABS | AT1G21710.1 | |
| VACCDSCAFF2:19896836-SNV | 2 | 2 | 19896836 | 3.74–4.45.74.45 | ΦPSII, ABS/RC, PIABS | AT1G21710.1 | |
| VACCDSCAFF2:19896903-SNV | 2 | 2 | 19896903 | 3.43–5.52.43.52 | ΦPSII, ABS/RC, PIABS | AT1G21710.1 | |
| HVA22-like protein a | VACCDSCAFF4:35919458-SNV | 4 | 3 | 35919458 | 4.09–6.25.09.25 | ΦPSII, ABS/RC, PIABS | AT1G74520.1 |
| DnaJ subfamily C member 14-like | VACCDSCAFF7:19264080-SNV | 7 | 5 | 19264080 | 4.25–5.27.25.27 | ΦPSII, Fv/Fo, ΦPo, PIABS | AT1G79030.1 |
| Tudor domain-containing protein 3 | VACCDSCAFF12:33880097-SNV | 12 | 7 | 33880097 | 2.95–6.13.95.13 | ΦPSII, ABS/RC, ETo/RC, ΦPo, PIABS | AT5G19950.3 |
| Pentatricopeptide repeat-containing protein | VACCDSCAFF12:33949584-SNV | 12 | 7 | 33949584 | 3.61–5.04.61.04 | ΦPSII, ABS/RC, Fv/Fm, ΦPo | AT5G55740.1 |
| Serine-threonine kinase receptor-associated protein-like isoform X1 | VACCDSCAFF12:34074639-SNV | 12 | 7 | 34074639 | 4.44–6.32.44.32 | ΦPSII, ABS/RC, Fv/Fm, ΦPo | AT1G52730.2 |
| DEAD-box ATP-dependent RNA helicase | VACCDSCAFF12:34659265-SNV | 12 | 7 | 34659265 | 4.27–6.32.27.32 | ΦPSII, ABS/RC, Fv/Fm, ΦPo | AT1G52730.2 |
| Chaperone protein DNAJ 49-like | VACCDSCAFF12:34718350-SNV | 12 | 7 | 34718350 | 3.56–5.57.56.57 | ΦPSII, ABS/RC, Fv/Fm, ΦPo | AT3G57340.2 |
| VACCDSCAFF12:34718648-SNV | 12 | 7 | 34718648 | 4.5–7.19.5.19 | ΦPSII, ABS/RC, Fv/Fm, ΦPo | AT3G57340.2 | |
| VACCDSCAFF12:34718659-SNV | 12 | 7 | 34718659 | 4.14–6.73.14.73 | ΦPSII, ABS/RC, Fv/Fm, ΦPo | AT3G57340.2 | |
| Otogelin like | VACCDSCAFF20:12840637-SNV | 20 | 10 | 12840637 | 4.27–5.79.27.79 | ΦPSII, ABS/RC, ETo/RC, ΦPo, PIABS | AT1G13380.1 |
| VACCDSCAFF22:1148606-SNV | 22 | 12 | 1148606 | 3.95–5.07.95.07 | ΦPSII, ABS/RC, Fv/Fo, PIABS | AT3G57340.2 | |
| Putative Hemopexin-like domain-containing protein | VACCDSCAFF22:1148614-SNV | 22 | 12 | 1148614 | 3.79–5.28.79.28 | ΦPSII, ABS/RC, Fv/Fo | AT5G41620.1 |
| U11/U12 small nuclear ribonucleoprotein (59 kDa) | VACCDSCAFF22:1283341-SNV | 22 | 12 | 1283341 | 3.3–4.85.3.85 | ΦPSII, ABS/RC, Fv/Fo | AT2G46200.2 |