TABLE 1.

Sequence analysis of Q8r1-96-specific loci

SSH clone	Insert size (bp)	Similar protein (accession no.), organism, and BLASTX E valuea	Predicted function or property
3	1,479	Sll1503 (S74977), Synechocystis sp. PCC6803, 7e−10	Hypothetical protein
5	933	None detected
6	549	Colicin M (P05820), E. coli plasmid ColBM-Cl139, 1e−16	Colicin M activity peptide
8	353	None detected
12	533	None detected
13	1,296	None detected
18	725	Clostridium acetobutylicum unfinished genome, 7e−11	Hypothetical protein
25	1,447	Pasteurella multocida unfinished genome, 5e−18	Hypothetical protein
26	596	None detected
28	213	PA0988 (AAG04377), P. aeruginosa, 3e−22	Hypothetical protein
32	787	None detected
36	660	None detected
41	692	None detected
45	452	P. putida KT2440 unfinished genome, 7e−14	Hypothetical protein
53	312	Rv1507c (P71786), Mycobacterium tuberculosis, 4e−21	Hypothetical protein
58	387	P. putida KT2440 unfinished genome, 6e−45	Hypothetical protein
61	418	P. putida KT2440 unfinished genome, 2e−35; PA3965 (AAG07352), P. aeruginosa, 1e−08; BkdR (P42179), P. putida, 3e−08; putative Lrp PA5308 (AE004943), P. aeruginosa, 3e−08	Putative transcriptional regulator
62	791	None detected
64	348	Rv1505c (D70713), M. tuberculosis, 8e−29	Hypothetical protein
66	624	None detected
74	401	None detected
80	828	None detected
81	318	Yersinia pestis unfinished genome, 8e−08	Hypothetical protein
83	462	None detected
85	381	PA1396 (F83470), P. aeruginosa, 2e−08	Probable two-component sensor
93	284	None detected
101	700	PA2461 (B83339), P. aeruginosa, 2e−30	Hypothetical protein
103	517	Yersinia pestis unfinished genome, 8e−17	Hypothetical protein
127	1,078	PA0448 (AE004482), P. aeruginosa, 9e−45; Klebsiella pneumoniae unfinished genome, 5e−30	Putative transcriptional regulator
132	650	None detected
133	672	None detected
164	506	YeeA (AAB66474), Bacillus subtilis, 3e−25	Conserved hypothetical protein

^aOnly expectation values of 1e⁻⁰⁵ and below were considered as significant matches during BLAST database searches.