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. 2025 Nov 11;18(11):1711. doi: 10.3390/ph18111711
PTM Post-Translational Modification
DL Deep Learning
ML Machine Learning
CNN Convolutional Neural Network
AAC Amino Acid Composition
PseAAC Pseudo-Amino-Acid Composition
NLP Natural Language Processing
CTD Composition–Transition–Distribution
HMM Hidden Markov Model
SO Sequence Order
PP Physicochemical Property
KNN K-Nearest Neighbors
KD Kyte–Doolittle
USP Ubiquitin-Specific Protease
DTW Dynamic Time Warping
IDRs Intrinsically Disordered Regions
RF Random Forest
SVM Support Vector Machine
ROC Receiver Operating Characteristic Curve
AUC Area Under the Curve