| PTM | Post-Translational Modification |
| DL | Deep Learning |
| ML | Machine Learning |
| CNN | Convolutional Neural Network |
| AAC | Amino Acid Composition |
| PseAAC | Pseudo-Amino-Acid Composition |
| NLP | Natural Language Processing |
| CTD | Composition–Transition–Distribution |
| HMM | Hidden Markov Model |
| SO | Sequence Order |
| PP | Physicochemical Property |
| KNN | K-Nearest Neighbors |
| KD | Kyte–Doolittle |
| USP | Ubiquitin-Specific Protease |
| DTW | Dynamic Time Warping |
| IDRs | Intrinsically Disordered Regions |
| RF | Random Forest |
| SVM | Support Vector Machine |
| ROC | Receiver Operating Characteristic Curve |
| AUC | Area Under the Curve |