TABLE 2.
Site | Enzyme used for DNA digestion | Unbroken fragment sizea(kb) | Predicted size of broken fragmentb(kb) | Break ≤1 kb from predicted positionc | Break ≥1 kb from predicted positionc | % breakage pcr1+d | % breakage pcr1Δd |
---|---|---|---|---|---|---|---|
1-1 | PacI | 15.2 | 10.4 | + | 0.5 | 0.5 | |
1-1 | PacI | 15.2 | 10.4 | + | 2.3 | 1.1 | |
1-2 | NruI | 15.0 | 10.8 | ||||
1-3 | NruI | 17.5 | 14.4 | + | 3.2, 2.7 | 2.3, 2.2 | |
1-4 | NcoI | 9.5 | 7.2 | + | 7.0 | 5.0 | |
2-1 | PacI | 15.9 | 12.4 | + | 3, 4.3 | 1.5, 2.8 | |
2-2 | PacI | 8.4 | 5.2 | + | 1.9 | 0.6 | |
2-3 | PacI | 18.3 | 13.1 | + | 3.3, 5.0 | 1.8, 2.9 | |
2-4 | NruI | 7.9 | 5.1 | + | <0.5 | <0.5 | |
2-4 | NruI | 7.9 | 5.1 | + | <0.5 | <0.5 | |
2-5 | NruI | 8.2 | 6.2 | + | 0.8, 0.5 | <0.5, <0.5 | |
2-6 | NruI | 14.0 | 10.7 | ||||
2-7 | NruI | 18.7 | 12.8 | + | <0.5, <0.5 | <0.5, <0.5 | |
3-2 | NruI | 10.3 | 4.4 | + | <0.5, <0.5 | <0.5, <0.5 | |
3-3 | NruI | 28.7 | 16.0 | + | 2.0 | 1.0 | |
3-4 | PacI | 10.5 | 6.5 | + | 1.8, 1.6 | 0.9, <0.5 | |
3-5 | NruI | 17.0 | 8.8 | + | 3.4 | 2.1 |
Predicted size of unbroken fragment from S. pombe genomic sequence (http://www.sanger.ac.uk/Projects/S_pombe/).
Size of hybridizing fragment predicted from a break within the M26/CRE sequence.
Fig. 2; see Fig. S1 of the supplemental material.
Percentage of total DNA in broken fragments. Pairs of values are from separate blots of one induction. pcr1+ and pcr1Δ strains were compared side by side on the same blot. The first value of each pair (pcr1+ or pcr1Δ) is from one blot, and the second value is from the second blot.