TABLE 1.
Strain | mol% identity with products of B. sacchari IPT101T genesa
|
Referenceb | |||
---|---|---|---|---|---|
prpB | prpC | acnM | ORF5 | ||
R. eutropha HF39 | 64 | 82 | 91 | 84 | 8 |
B. cepacia | NDc | 88 | 83 | 80 | |
N. meningitidis serogroup A | 63 | 74 | 79 | 67 | 34 |
N. meningitidis serogroup B | 63 | 74 | 78 | 67 | 49 |
P. aeruginosa PAO1 | 61 | 54 | 83 | 71 | 46 |
P. putida KT2440 | 64 | 53 | 86 | 83 | |
P. fluorescens | 60 | 54 | 84 | 77 | |
P. syringae | 64 | 52 | —d | 79 | |
E. coli K-12 | 58 | 76 | ND | ND | 50 |
E. coli O157:H17 | 57 | 76 | ND | ND | 35 |
S. enterica serovar Typhimurium | 58 | 75 | ND | ND | 22 |
L. pneumophila | ND | 51 | ND | ND | |
V. cholerae | 57 | 51 | 75 | 69 | 19 |
S. putrefaciens | 66 | 54 | 84 | 80 | |
R. metallidurans CH34 | 60 | 84 | 89 | 80 |
Levels of amino acid identity.
The data for some of the organisms were obtained from the following sources: B. cepacia, P. fluorescens, and R. metallidurans, http://www.expasy.ch/cgi-bin/nicesite.p1?PS00161; P. putida, P. syringae, and S. putrefaciens, http://www.tigr.org/cgi-bin/BlastSearch/blast.cgi?organism; and L. pneumophila, accession no. AAD42885.
ND, not detected in the database.
—, only incomplete sequences were available.