TABLE 4.
Sequences of the designed 16S rRNA specific probe and of targeted and nontargeted organisms
| Probe (OPD nomenclature)a or organism | Sequence (5′-3′) | Organism present in human feces |
|---|---|---|
| S-*-ProCo-1264-a-A-23 | TTGGGATTCGCTCAACATCGCTG | |
| Target | CAGCGATGTTGAGCGAATCCCAA | |
| Ruminococcus callidus ATCC 27760 | .........G....A........ | + |
| Clostridium clostridiiforme ATCC 25537 | ...T.....G....A........ | + |
| Ruminococcus flavefaciens ATCC 49949 | ...T.....G.........T... | |
| Peptostreptococcus ivorii DSM 10023 | ..........A...........T | |
| Eubacterium fissicatena DSM 3598 | .C.......G.........T... | |
| Eubacterium angustum ATCC 43737 | G.........C.G.......... |
a
OPD, Oligonucleotide Probe Database (1).