Table 1. Genes differentially expressed in infected macrophages between congenic and parental lines, which are also common across the reciprocal congenic lines.

Gene symbol	Gene name	Chromosome, position	Fold change BALB/c v. C.lmr1/2	Up or down	Fold change C57BL/6 v. B6.lmr1/2	Up or down
1110008E19Rik	RIKEN cDNA	17, A3.3	1.48	D	1.48	U
Tmsb10	Thymosin, β10	2, 18.0 cM	1.32	U	1.38	D
Cxcl2	Chemokine (C-X-C motif) ligand 2	5, 51.0 cM	3.25	D	1.57	U
2010100O12Rik	RIKEN cDNA	2, H1	1.34	U	1.34	D
H2-D1	Histocompatibility 2, D region locus 1	17, 19.09 cM	3.99	D	3.83	U
Sdha	Succinate dehydrogenase complex, subunit A, flavoprotein	13, C1	1.44	U	1.50	D
Pim1	Proviral integration site 1	17, 16.4 cM	1.77	D	1.50	U
Rpo1-1	RNA polymerase 1-1 (40-kDa subunit)	17, B3	1.81	U	1.85	D
—	IMAGE: 4192122, mRNA	—	2.39	D	1.80	U
Acta2	Actin, α2,	19, C3	1.97	U	1.59	D
Rbbp7	Retinoblastoma binding protein 7	X, F4	1.47	U	1.51	D
H2-Ea	Histocompatibility 2, class II antigen E α	17, 18.7 cM	14.34	D	6.08	U
Ltb	Lymphotoxin B	17, 19.06 cM	1.67	D	1.70	U
—	RIKEN clone	—	1.69	U	1.60	D
5730403E06Rik	RIKEN cDNA	X, A1.1	1.49	U	1.37	D
qk	Quaking	17, 5.9 cM	1.41	U	1.78	D
Col1a1	Procollagen, type I, α1	11, 56.0 cM	1.48	U	1.72	D
Fen1	Flap structure specific endonuclease 1	19, A	1.89	U	1.50	D
2310015N07Rik	RIKEN cDNA	7,	1.46	U	1.50	D
Ctgf	Connective tissue growth factor	10, 17.0 cM	2.17	U	1.56	D
1110008E19Rik	RIKEN cDNA	17, A3.3	1.63	D	1.61	U
2610003J05Rik	RIKEN cDNA	4, D3	1.38	U	1.36	D
Pbx3	Pre-B cell leukemia transcription factor 3	2, 22.0 cM	1.44	U	1.45	D
Zfp36	Zinc finger protein 36	7, 10.2 cM	2.08	D	1.43	D
H2-Aa	Histocompatibility 2, class II antigen A, α	17, 18.65 cM	1.36	D	1.50	D
Mapkapk2	MAP kinase-activated protein kinase 2	1, E4	1.4	D	1.48	D

U, up in congenic; D, down in congenic. All comparisons with infected cells. MAP, mitogen-activated protein.